马晓开，男，教授，福建省高层次人才，福建农林大学基因组中心课题组组长。2016年中科院植物所系统与进化植物学国重实验室获博士学位； 2011年在苏黎世大学系统演化植物所访问研究；2016年在日本国立统计数理研究所(ISM)生物信息学访问研究。2016年就职海峡联合研究院基因组中心，从事植物多组学及繁育系统进化和分子机理研究。主持国家基金面上、青年及省部级等项目11项。迄今共发表论文40余篇（SCI 33篇），其中以第一/通讯（含并列）作者在Genome Biology，Plant Communications, Briefings in Bioinformatics, Plant Biotechnology Journal等刊物发表SCI论文17篇，其中Featured Article 1篇，F1000重点推荐1篇，ESI高被引1篇，Cell出版社年际高影响力文章1篇；以合作者在Cell，Nature Genetics等刊物发表SCI论文16篇。授权专利2项（转化1项）。合编教育部首批特色专业教材1部。受邀担任SCI期刊《BMC Genomics》编委，《生物多样性》首届青年编委，SCI期刊《Biology》《BMC Genomic Data》《JoVE》等期刊专辑主编。Nature Communications，Communications Biology，Horticulture Research，Plant Diversity等期刊审稿人。
研究方向：
1. 植物繁育系统的起源演化和分子机理
2. 植物关键创新性状的适应性演化和分子机理
3. 单细胞、时空组学与群体基因组学
学术论文（#代表共同第一作者，*代表通讯作者）：
1. Lin L., Wang H., Chen Y., Wang Y., Xu Y., Chen Z., Yang Y., Liu K., Ma, X.* (2025) STMGraph: Spatial-context-aware of transcriptomes via a dual-remasked dynamic graph attention model. Briefings in Bioinformatics. 26(1), bbae685. (JCR 1区; 中科院1区; Top期刊) [空间组学算法STMGraph]
2. Huang H.#, Sun Y.#, Ju S.#, Wei H.#, Rong B.,…, Wu Y., Qiu D., Yan J., Ma X.* (2025) De novo transcriptomes of floral bracts for 22 Bougainvillea accessions Scientific Data. (JCR 1区; 中科院2区; Top期刊)
3. Fatima, M., Ma, X., Zhang, J., & Ming, R. (2024). Genome-wide analysis of MADS-box genes and their expression patterns in unisexual flower development in dioecious spinach. Scientific Reports, 14(1), 18635. (JCR 1区; 中科院2区)
4. Kafkas, S.#, Ma, X.#, Zhang, X., Topçu, H., …, Michelmore, R., Ming, R. * (2023) The Pistachio genomes provide insights into nut tree domestication and ZW sex chromosome evolution. Plant Communications. 4(3). (JCR 1区; 中科院1区; Top期刊；[Cell出版社2020-23年际植物科学类高影响力文章]
5. Ma, X.* Ju, S., Lin, H …, Ming R., Lan S., Liu, Z.* (2023) Sex-related gene network revealed by transcriptome differentiation of bisexual and unisexual flowers of orchid Cymbidium tortisepalum. International Journal of Molecular Sciences. 24 (23), 16627 (JCR 1区; 中科院2区; Top期刊)
6. Chai, K., Chen, S., Wang, P., Kong, W., Ma, X., & Zhang, X. (2023). Multiomics analysis reveals the genetic basis of volatile terpenoid formation in oolong tea. Journal of Agricultural and Food Chemistry, 71(49), 19888-19899. (JCR 1区; 中科院1区; Top期刊)
7. Ma, X. #, Yu, L. #, Fatima, M. #, Wadlington, W., … Tang, H., Van Deynze, A. & Ming, R.* (2022) The spinach YY genome reveals sex chromosome evolution, domestication and introgression history of the species. Genome Biology (Featured Article) 23(1), 1-30. [highlight in F1000 Biology: https://f1000.com/prime/741791436] (JCR 1区; 中科院1区Top)
8. Ma, X., Fatima, M., Lin, J., …, Ming, R. * (2022) Post pollination sepal longevity of female flower co-regulated by energy-associated multiple pathways in dioecious spinach Frontiers in Plant Science, doi: 1010149. (JCR 1区; 中科院1区; Top期刊)
9. Huang, H., Ji, H., Ju, S., …, & Ma, X.* (2022) Pan-transcriptome combined with phenotypic quantification reveals germplasm kinship and regulation network of bract color variation in Bougainvillea. Frontiers in Plant Science, doi: 10.3389/fpls.2022.1018846. (JCR 1区; 中科院1区; Top期刊)
10. Li, M.#, Liu, K.#, Li, Z.#, Lu, H.#, Ye, Q.#, Zhang, D., …, Ma. X., ..., Tsai W., & Liu, Z. (2022). Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy. Nature Plants, 8(4), 373-388. (JCR 1区; 中科院1区; Top期刊)
11. Wang, J., Li, J., Deng, B., ..., & Ma, X.* (2022) Genome-wide identification and adaptive evolution of CesA/Csl superfamily among species with different life-forms in Orchidaceae. Frontiers in Plant Science, 3504. doi.org/10.3389/fpls.2022.994679. (JCR 1区; 中科院1区; Top期刊)
12. Yue, J.#, VanBuren, R. #, Liu, J. #, Fang, J. #, Zhang, X., ... Ma, X., …, & Ming, R. (2022). SunUp and Sunset genomes revealed impact of particle bombardment mediated transformation and domestication history in papaya. Nature Genetics, 54(5), 715-724. (JCR 1区; 中科院1区; Top期刊)
13. Zhang, L.#, Ma, X.#, Zhang, X.#, Xu, Y.#, Ibrahim, A. K., ... & Zhang, L.* (2021). Reference genomes of the two cultivated jute species. Plant Biotechnology Journal 19(11), 2235-2248. (JCR 1区; 中科院1区; Top期刊)
14. Fatima, M.#, Ma, X.#, Zhou, P., Zaynab, M., Ming, R.* (2021). Auxin regulated mechanisms underlying sepal retention and development after pollination in spinach. BMC Plant Biology, 21(1), 1-15. (JCR 1区; 中科院2区)
15. Lin, J. #, Zhang, W. #, Zhang, X. Ma, X., Zhang S., … & Ming, R.* (2022) Signatures of selection in recently domesticated macadamia. Nature Communications 13(1), 1-12. (JCR 1区; 中科院1区; Top期刊)
16. Lin, W. #, Wu, Y. #, Wang, J. #, Lin, H. #, Xu, X. & Ma, X.* (2020). Network pharmacology study of the hepatoprotective effects of quercetin-containing traditional Chinese medicine, Anoectochilus roxburghii, and validation of quercetin as an anti-liver injury agent in a mouse model of liver injury. Medical Science Monitor. 26: e923533-1. (JCR3区; 中科院4区)
17. Zhang, L. #, Xu, Y. #, Zhang, X. #, Ma, X. #, Zhang, L. #, ... & Qi, J* ; Ming, R.* (2020). The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fiber and leaf shape biogenesis. Plant Biotechnology Journal. 18(8), 1796-1809. (JCR 1区; 中科院1区; Top期刊)
18. Lin, W., Wang, J., Xu, X., Wu, Y., Qiu, D., He, B., ... Ma, X.* & Chen, J.* (2020). Rapid propagation in vitro and accumulation of active substances of endangered Dendrobium cariniferum Rchb. f. Bioengineered, 11(1), 386-396. (JCR 1区; 中科院2区)
19. Sun, W. H., Li, Z., Xiang, S., Ni, L., …, Ma, X., ... & Zou, S. Q.* (2021). The Euscaphis japonica genome and the evolution of malvids. The Plant Journal 108(5), 1382-1399. (JCR 1区; 中科院1区; Top期刊)
20. Zhang, W.#, Lin, J. #, Li, J., Zheng, S., Zhang, X., Chen, S., Ma, X., Dong, F., ... & Ming, R.* (2021). Rambutan genome revealed gene networks for spine formation and aril development. The Plant Journal 108(4), 1037-1052 (JCR 1区; 中科院1区; Top期刊)
21. Yu, L., Ma, X., Wadlington, W., & Ming, R.* (2021). Identification of structural variation and polymorphisms of a sex co-segregating scaffold in spinach. Plant Reproduction 35(1), 19-30. (JCR 1区; 中科院3区)
22. Zhang, X.#, Chen, S.#, Shi, L.#, Gong, D.#, Zhang, S., Zhao, Q., ..., Ma,X., ... & You, M.* (2021). Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis. Nature Genetics 53(8), 1250-1259. (JCR 1区; 中科院1区; Top期刊)
23. Cao, Y. L., Li, Y. L., Fan, Y. F., Li, Z., Yoshida, K., Wang, J. Y., Ma, X. ... & Liu, Z. J.* (2021). Wolfberry genomes and the evolution of Lycium (Solanaceae). Communications biology, 4(1), 1-13. (JCR 1区; 中科院2区; Top期刊)
24. Lin, H.#, Sun, Y.#, & Ma, X*. (2020). The complete plastome of Cymbidium tortisepalum (Orchidaceae) hermaphrodite, Mitochondrial DNA Part B 4(2), 4089-4090. (JCR 4区; 中科院4区)
25. Zhang, X.#, Wang, G.#, Zhang, S., Chen, S., Wang, Y., Wen, P., Ma, X.,... & Ming, R.* (2020). Genomes of the banyan tree and pollinator wasp provide insights into fig-wasp coevolution. Cell. 183(4): 875-889 (JCR 1区; 中科院1区; Top期刊)
26. Yu, L., Ma, X., Deng, B., Yue, J., & Ming, R.* (2020) Construction of high-density genetic maps defined sex determination region of the Y chromosome in spinach. Molecular Genetics and Genomics 296(1), 41-53. (JCR 3区; 中科院3区)
27. Ma, X., Lin, H., Chen, Y., & Ming, R.* (2019). The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum female. Mitochondrial DNA Part B, 4(2), 3876-3877. (JCR 4区; 中科院4区)
28. Sun, Y., Chen, Y., Lin, H., & Ma, X.* (2019). The complete chloroplast genome of a Cymbidium tortisepalum male mutant. Mitochondrial DNA Part B, 4(2), 4087-4088. (JCR 4区; 中科院4区)
29. Meng, Z., Han, J., Lin, Y., Zhao, Y., Lin, Q., Ma, X., ... & Wang, K*. (2019). Characterization of a Saccharum spontaneum with a basic chromosome number of x= 10 provides new insights on genome evolution in genus Saccharum. Theoretical and Applied Genetics, 1-13. (JCR 1区; 中科院1区; Top期刊)
30. Yang, X., Song, J., Todd, J., Peng, Z., Paudel, D., Luo, Z., Ma, X., ... , & Zhao, Y.* (2019). Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a ‘sweet’ crop with ‘bitter’ genomes. Plant Biotechnology Journal, 17(2), 488-498. (JCR 1区; 中科院1区; Top期刊)
31. Zhang, J.#, Zhang, X.#, Tang, H.#, Zhang, Q.#, Hua, X., Ma, X., ... & Ming, R.*. (2018). Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics, 50(11), 1565. (JCR 1区; 中科院1区; Top期刊)
32. Ma, X., Shi, J., Banziger, H., Sun, Y., Guo, Y., …, & Luo, Y*. (2016). The functional significance of complex floral colour pattern in a food-deceptive orchid. Functional Ecology, 30, 721-732. (JCR 1区; 中科院1区; Top期刊)
33. Chen, G., Ma, X., Jürgens, A., Lu, J., Liu, E., Sun, W*. and Cai, X*. (2015). Mimicking livor mortis: a well-known but unsubstantiated color profile in Sapromyiophily. Journal of Chemical Ecology, 41, 808-815. (JCR 3区; 中科院4区)
34. Lin, W., Liu, H., Ma, X., Ying, T., Zhang, Z., Wang, Z. and Luo, Y*. (2014). Can the rare and critically endangered Geodorum eulophioides hybridize naturally with its two sympatric congeners. Orchids, 83(3), 178-183.
35. Wang, Y*., Zhang, Y., Ma, X. and Dong, L. (2008). The unique mouse pollination in an orchid species. Nature Precedings 10101/npre.2008.1824.1.
36. 王晶晶, 马晓开, …, 等. (2023). 铁皮石斛甘露糖含量与其颜色的相关性研究. 中华中医药学刊, 41(6), 32-36.
37. 刘逸, 林瀚,…,马晓开* (2018) 组学时代下植物-传粉者互作的研究. 福建农林大学学报(自然科学版), 47(06): 641-649
38. 李庆良, 马晓开, …,等 (2012) 花颜色和花气味的量化研究方法. 生物多样性, 20, 308-316. (权威期刊)
授权专利：
1. 马晓开，等（2022）一种莲瓣兰单性品种离体再生体系建立及快速繁殖方法 发明专利 ZL.2019103108487（已完成专利转化）
教材编著：
1. 观赏植物种质资源学 (2012)
承担课题：
纵向
1. 国家自然科学--面上项目，32470246，菠菜属同型和异型新生性染色体突变荷载及补偿机制的进化，2025/01- 2028/12，主持
2. 福建农林大学科技创新专项基金，KFb22112XA，被子植物花部信号调控网络的平行演化机理，2022/10-2025/09，主持
3. 福建省自然科学基金--面上项目，2021J01142，表达重塑和补偿在雌雄异株起源和进化中的作用，2021/11-2024/11，主持
4. 福建省自然科学基金--面上项目，2018J01606，人工驯化对菠菜性染色体进化的作用，2018/04-2021/04，主持
5. 国家自然科学基金--青年基金项目，31700199，杓兰亚科繁殖系统转变介导的花部信号趋同演化的机制，2018/01- 2020/12，主持
6. 福州市市级科技计划项目，2017-G-88，莲瓣兰的性别决定机理及单性品种选育，2017/03- 2019/02，主持
横向
7. 江西省农科院开放课题，KH200195A，油菜近缘种蔊菜群体基因组及花瓣缺失的分子机理，2019/12-2025/12，主持
8. 福建大千集团横向课题，KH200285A，三角梅品种间系谱关系及苞片颜色转录调控机理，2020/10-2025/10，主持
9. 成果技术转让，KHJTZ2226，“一种莲瓣兰单性品种离体再生体系建立及快速繁殖方法”成果转让，2022/12，主持
教学情况：
1. 本科生课程：《基因组学与应用生物学》《生物学基础及应用》《植物学A》《植物科学研究进展》
2. 研究生课程：《生物大数据》《植物生物学研究前沿》《作物生物学前沿》《高级遗传学》《生物工程综合实验》
招生专业：
071000 生物学 （组学、分子生物学、遗传学、计算生物学等方向）
086001 生物技术与工程（组学、合成基因工程、计算生物学等方向）
090102 作物遗传育种 （作物遗传育种等方向）
0902Z4 观赏园艺学（园艺植物生物技术与生物育种等方向）
095131 农艺与种业 （园艺或作物遗传育种等方向）
联系方式：
邮箱：equusma@126.com
