马晓开，男，教授，博士生导师，福建省高层次人才，福建农林大学基因组中心课题组组长。2016年中科院植物所系统与进化植物学国重实验室获博士学位； 2011年在苏黎世大学系统演化植物所访问研究；2016年在日本国立统计数理研究所(ISM)生物信息学访问研究。2016年就职海峡联合研究院基因组中心，从事植物多组学及繁育系统进化和分子机理研究。主持国家基金面上、青年及省部级等项目11项。迄今共发表论文40余篇（SCI 35篇），其中以第一/通讯（含并列）作者在Genome Biology，Plant Communications, Briefings in Bioinformatics, Plant Biotechnology Journal等刊物发表SCI论文18篇，其中Featured Article 1篇，F1000重点推荐1篇，ESI高被引1篇，Cell出版社年际高影响力文章1篇；以合作者在Cell，Nature Genetics等刊物发表SCI论文17篇。授权专利2项（转化1项）。合编教育部首批特色专业教材1部。受邀担任SCI期刊《BMC Genomics》编委，《生物多样性》首届青年编委，多个SCI期刊专辑主编。Nature Communications，Communications Biology，Horticulture Research，Plant Diversity等期刊审稿人。
研究方向：
1. 植物繁育系统的起源演化和分子机理；
2. 植物关键创新性状的适应性演化和分子机理；
3. 空间多组学、单细胞变异组学与群体基因组学。
学术论文（#代表共同第一作者，*代表通讯作者）：
1. Lin L., Wang H., Chen Y., Wang Y., Xu Y., Chen Z., Yang Y., Liu K., Ma, X.* (2025) STMGraph: Spatial-context-aware of transcriptomes via a dual-remasked dynamic graph attention model. Briefings in Bioinformatics. 26(1), bbae685. (JCR 1区; 中科院1区; Top期刊) [空间组学算法STMGraph]
2. Jiao Z., Ren Z., Hu C., Ma X., Zhang G., …, Lan S., Luo Y., Liu Z., (2025) Unidirectional genomic introgression facilitates the colonization of invasive orchid in arid metal-enriched sedimental habitats. Plant Communications, 101561 (JCR 1区; 中科院1区; Top期刊)
3. Huang H.#, Sun Y.#, Ju S.#, Wei H.#, Rong B.,…, Wu Y., Qiu D., Yan J., Ma X.* (2025) De novo transcriptomes of floral bracts for 22 Bougainvillea accessions Scientific Data. 12, 645 (JCR 1区; 中科院2区; Top期刊)
4. Fatima M., Ma X., Khalid E., Ming R.* (2025) Genetic mapping and transcriptomic analysis of sepal-derived seed shape in spinach. International Journal of Molecular Sciences, 26 (22), 10838. (JCR 1区; 中科院2区)
5. Lan S., Liu K., Li Z., Hsiao Y, Liu Y., Zhang D., Zhao X., Sun W, Liu D., Huang M., Zhou C., Zeng M., Wang L., Zheng R., Gao X., Lai J, Yeh K., Zhang L., Chen J., Ma X., Li Y., Chen D., ..., Tang H., Tsai W., Van de Peer Y., Liu Z.* (2025) Super-giga and tiny orchid genomes illuminate evolution of Orchidaceae. BioRxiv 06.13.659439 (Preprint).
6. Fatima, M., Ma, X., Zhang, J., & Ming, R. (2024). Genome-wide analysis of MADS-box genes and their expression patterns in unisexual flower development in dioecious spinach. Scientific Reports, 14(1), 18635. (JCR 1区; 中科院2区)
7. Kafkas, S.#, Ma, X.#, Zhang, X., Topçu, H., …, Michelmore, R., Ming, R. * (2023) The Pistachio genomes provide insights into nut tree domestication and ZW sex chromosome evolution. Plant Communications. 4(3). (JCR 1区; 中科院1区; Top期刊；[Cell出版社年际植物科学类高影响力文章]
8. Ma, X.* Ju, S., Lin, H …, Ming R., Lan S., Liu, Z.* (2023) Sex-related gene network revealed by transcriptome differentiation of bisexual and unisexual flowers of orchid Cymbidium tortisepalum. International Journal of Molecular Sciences. 24 (23), 16627 (JCR 1区; 中科院2区; Top期刊)
9. Chai, K., Chen, S., Wang, P., Kong, W., Ma, X., & Zhang, X. (2023). Multiomics analysis reveals the genetic basis of volatile terpenoid formation in oolong tea. Journal of Agricultural and Food Chemistry, 71(49), 19888-19899. (JCR 1区; 中科院1区; Top期刊)
10. Ma, X. #, Yu, L. #, Fatima, M. #, Wadlington, W., … Tang, H., Van Deynze, A. & Ming, R.* (2022) The spinach YY genome reveals sex chromosome evolution, domestication and introgression history of the species. Genome Biology (Featured Article) 23(1), 1-30. [highlight in F1000 Biology: https://f1000.com/prime/741791436] (JCR 1区; 中科院1区Top)
11. Ma, X., Fatima, M., Lin, J., …, Ming, R. * (2022) Post pollination sepal longevity of female flower co-regulated by energy-associated multiple pathways in dioecious spinach Frontiers in Plant Science, doi: 1010149. (JCR 1区; 中科院1区; Top期刊)
12. Huang, H., Ji, H., Ju, S., …, & Ma, X.* (2022) Pan-transcriptome combined with phenotypic quantification reveals germplasm kinship and regulation network of bract color variation in Bougainvillea. Frontiers in Plant Science, doi: 10.3389/fpls.2022.1018846. (JCR 1区; 中科院1区; Top期刊)
13. Li, M.#, Liu, K.#, Li, Z.#, Lu, H.#, Ye, Q.#, Zhang, D., …, Ma. X., ..., Tsai W., & Liu, Z. (2022). Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy. Nature Plants, 8(4), 373-388. (JCR 1区; 中科院1区; Top期刊)
14. Wang, J., Li, J., Deng, B., ..., & Ma, X.* (2022) Genome-wide identification and adaptive evolution of CesA/Csl superfamily among species with different life-forms in Orchidaceae. Frontiers in Plant Science, 3504. doi.org/10.3389/fpls.2022.994679. (JCR 1区; 中科院1区; Top期刊)
15. Yue, J.#, VanBuren, R. #, Liu, J. #, Fang, J. #, Zhang, X., ... Ma, X., …, & Ming, R. (2022). SunUp and Sunset genomes revealed impact of particle bombardment mediated transformation and domestication history in papaya. Nature Genetics, 54(5), 715-724. (JCR 1区; 中科院1区; Top期刊)
16. Lin, J. #, Zhang, W. #, Zhang, X. Ma, X., Zhang S., … & Ming, R.* (2022) Signatures of selection in recently domesticated macadamia. Nature Communications 13(1), 1-12. (JCR 1区; 中科院1区; Top期刊)
17. Zhang, L.#, Ma, X.#, Zhang, X.#, Xu, Y.#, Ibrahim, A. K., ... & Zhang, L.* (2021). Reference genomes of the two cultivated jute species. Plant Biotechnology Journal 19(11), 2235-2248. (JCR 1区; 中科院1区; Top期刊)
18. Fatima, M.#, Ma, X.#, Zhou, P., Zaynab, M., Ming, R.* (2021). Auxin regulated mechanisms underlying sepal retention and development after pollination in spinach. BMC Plant Biology, 21(1), 1-15. (JCR 1区; 中科院2区)
19. Sun, W. H., Li, Z., Xiang, S., Ni, L., …, Ma, X., ... & Zou, S. Q.* (2021). The Euscaphis japonica genome and the evolution of malvids. The Plant Journal 108(5), 1382-1399. (JCR 1区; 中科院1区; Top期刊)
20. Zhang, W.#, Lin, J. #, Li, J., Zheng, S., Zhang, X., Chen, S., Ma, X., Dong, F., ... & Ming, R.* (2021). Rambutan genome revealed gene networks for spine formation and aril development. The Plant Journal 108(4), 1037-1052 (JCR 1区; 中科院1区; Top期刊)
21. Yu, L., Ma, X., Wadlington, W., & Ming, R.* (2021). Identification of structural variation and polymorphisms of a sex co-segregating scaffold in spinach. Plant Reproduction 35(1), 19-30. (JCR 1区; 中科院3区)
22. Zhang, X.#, Chen, S.#, Shi, L.#, Gong, D.#, Zhang, S., Zhao, Q., ..., Ma,X., ... & You, M.* (2021). Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis. Nature Genetics 53(8), 1250-1259. (JCR 1区; 中科院1区; Top期刊)
23. Cao, Y. L., Li, Y. L., Fan, Y. F., Li, Z., Yoshida, K., Wang, J. Y., Ma, X. ... & Liu, Z. J.* (2021). Wolfberry genomes and the evolution of Lycium (Solanaceae). Communications biology, 4(1), 1-13. (JCR 1区; 中科院2区; Top期刊)
24. Lin, H.#, Sun, Y.#, & Ma, X*. (2020). The complete plastome of Cymbidium tortisepalum (Orchidaceae) hermaphrodite, Mitochondrial DNA Part B 4(2), 4089-4090. (JCR 4区; 中科院4区)
25. Lin, W. #, Wu, Y. #, Wang, J. #, Lin, H. #, Xu, X. & Ma, X.* (2020). Network pharmacology study of the hepatoprotective effects of quercetin-containing traditional Chinese medicine, Anoectochilus roxburghii, and validation of quercetin as an anti-liver injury agent in a mouse model of liver injury. Medical Science Monitor. 26: e923533-1. (JCR3区; 中科院4区)
26. Zhang, L. #, Xu, Y. #, Zhang, X. #, Ma, X. #, Zhang, L. #, ... & Qi, J* ; Ming, R.* (2020). The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fiber and leaf shape biogenesis. Plant Biotechnology Journal. 18(8), 1796-1809. (JCR 1区; 中科院1区; Top期刊)
27. Lin, W., Wang, J., Xu, X., Wu, Y., Qiu, D., He, B., ... Ma, X.* & Chen, J.* (2020). Rapid propagation in vitro and accumulation of active substances of endangered Dendrobium cariniferum Rchb. f. Bioengineered, 11(1), 386-396. (JCR 1区; 中科院2区)
28. Zhang, X.#, Wang, G.#, Zhang, S., Chen, S., Wang, Y., Wen, P., Ma, X.,... & Ming, R.* (2020). Genomes of the banyan tree and pollinator wasp provide insights into fig-wasp coevolution. Cell. 183(4): 875-889 (JCR 1区; 中科院1区; Top期刊)
29. Yu, L., Ma, X., Deng, B., Yue, J., & Ming, R.* (2020) Construction of high-density genetic maps defined sex determination region of the Y chromosome in spinach. Molecular Genetics and Genomics 296(1), 41-53. (JCR 3区; 中科院3区)
30. Ma, X., Lin, H., Chen, Y., & Ming, R.* (2019). The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum female. Mitochondrial DNA Part B, 4(2), 3876-3877. (JCR 4区; 中科院4区)
31. Sun, Y., Chen, Y., Lin, H., & Ma, X.* (2019). The complete chloroplast genome of a Cymbidium tortisepalum male mutant. Mitochondrial DNA Part B, 4(2), 4087-4088. (JCR 4区; 中科院4区)
32. Meng, Z., Han, J., Lin, Y., Zhao, Y., Lin, Q., Ma, X., ... & Wang, K*. (2019). Characterization of a Saccharum spontaneum with a basic chromosome number of x= 10 provides new insights on genome evolution in genus Saccharum. Theoretical and Applied Genetics, 1-13. (JCR 1区; 中科院1区; Top期刊)
33. Yang, X., Song, J., Todd, J., Peng, Z., Paudel, D., Luo, Z., Ma, X., ... , & Zhao, Y.* (2019). Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a ‘sweet’ crop with ‘bitter’ genomes. Plant Biotechnology Journal, 17(2), 488-498. (JCR 1区; 中科院1区; Top期刊)
34. Zhang, J.#, Zhang, X.#, Tang, H.#, Zhang, Q.#, Hua, X., Ma, X., ... & Ming, R.*. (2018). Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics, 50(11), 1565. (JCR 1区; 中科院1区; Top期刊)
35. Ma, X., Shi, J., Banziger, H., Sun, Y., Guo, Y., …, & Luo, Y*. (2016). The functional significance of complex floral colour pattern in a food-deceptive orchid. Functional Ecology, 30, 721-732. (JCR 1区; 中科院1区; Top期刊)
36. Chen, G., Ma, X., Jürgens, A., Lu, J., Liu, E., Sun, W*. and Cai, X*. (2015). Mimicking livor mortis: a well-known but unsubstantiated color profile in Sapromyiophily. Journal of Chemical Ecology, 41, 808-815. (JCR 3区; 中科院4区)
37. Lin, W., Liu, H., Ma, X., Ying, T., Zhang, Z., Wang, Z. and Luo, Y*. (2014). Can the rare and critically endangered Geodorum eulophioides hybridize naturally with its two sympatric congeners. Orchids, 83(3), 178-183.
38. Wang, Y*., Zhang, Y., Ma, X. and Dong, L. (2008). The unique mouse pollination in an orchid species. Nature Precedings 10101/npre.2008.1824.1.
39. 王晶晶, 马晓开, …, 等. (2023). 铁皮石斛甘露糖含量与其颜色的相关性研究. 中华中医药学刊, 41(6), 32-36.
40. 杨跃敏 罗丹妮 秦梦珂 郭润杰 王媛媛 刘锟鹏 马晓开* (2025) MYB、bHLH、WD40调控兰科植物花色花香研究进展 植物遗传资源学报
41. 刘逸, 林瀚,…,马晓开* (2018) 组学时代下植物-传粉者互作的研究. 福建农林大学学报(自然科学版), 47(06): 641-649
42. 李庆良, 马晓开, …,等 (2012) 花颜色和花气味的量化研究方法. 生物多样性, 20, 308-316. (权威期刊)
授权专利：
1. 马晓开，等（2022）一种莲瓣兰单性品种离体再生体系建立及快速繁殖方法 发明专利 ZL.2019103108487（已完成专利转化）
教材编著：
1. 观赏植物种质资源学 (2012)
承担课题：
1. 国家自然科学基金--面上项目，32470246，菠菜属同型和异型新生性染色体突变荷载及补偿机制的进化，2025/01- 2028/12，主持
2. 福建农林大学科技创新专项基金，KFb22112XA，被子植物花部信号调控网络的平行演化机理，2022/10-2025/09，主持
3. 福建省自然科学基金--面上项目，2021J01142，表达重塑和补偿在雌雄异株起源和进化中的作用，2021/11-2024/11，主持
4. 福建省自然科学基金--面上项目，2018J01606，人工驯化对菠菜性染色体进化的作用，2018/04-2021/04，主持
5. 国家自然科学基金--青年基金项目，31700199，杓兰亚科繁殖系统转变介导的花部信号趋同演化的机制，2018/01- 2020/12，主持
6. 福州市市级科技计划项目，2017-G-88，莲瓣兰的性别决定机理及单性品种选育，2017/03- 2019/02，主持
7. 江西省农科院开放课题，KH200195A，油菜近缘种蔊菜群体基因组及花瓣缺失的分子机理，2019/12-2025/12，主持
8. 福建大千集团横向课题，KH200285A，三角梅品种间系谱关系及苞片颜色转录调控机理，2020/10-2025/10，主持
9. 成果技术转让，KHJTZ2226，“一种莲瓣兰单性品种离体再生体系建立及快速繁殖方法”成果转让，2022/12，主持
教学情况：
1. 本科生课程：《基因组学与应用生物学》《生物学基础及应用》《植物学A》《植物科学研究进展》
2. 研究生课程：《生物大数据》《植物生物学研究前沿》《作物生物学前沿》《高级遗传学》《生物工程综合实验》
招生专业：
071000生物学 （组学、分子生物学、遗传学、计算生物学等方向）
086001生物技术与工程（组学、合成基因工程、计算生物学等方向）
090102作物遗传育种 （作物遗传育种等方向）
0902Z4观赏园艺学（园艺植物生物技术与生物育种等方向）
095131农艺与种业 （园艺或作物遗传育种等方向）
联系方式：
邮箱：equusma@126.com
