秦源，女，博士，博士生导师，第十四届全国人大代表，民革福建省第十四届委员会副主委, 福建省人民政府顾问，福建农林大学生命科学学院院长，教育部“长江学者”特聘教授，享受国务院政府特殊津贴专家， “国家优秀青年科学基金”获得者，中英人才项目“牛顿高级学者基金”获得者，福建省高层次人才（A类），福建省“百人计划”，福建省高校青年拔尖人才，福建省“闽江学者”特聘教授，广西壮族自治区特聘专家，获福建省自然科学一等奖（排名第2）、二等奖（排名第1）、三等奖（排名第3），福建省高等教育教学成果二等奖（排名第1），福建青年科技奖，福建运盛青年科技奖，福建青年五四奖章，福建省三八红旗手标兵，福建省最美女科技工作者，中国植物生理与分子生物学学会卫志明青年创新奖，福建省“向上向善育人工程基金”奖教金。先后主持“科技创新2030——农业生物育种重大项目子课题”、国家自然科学“国家重点研发计划‘合成生物学’重点专项项目子课题”、“国家自然科学国际合作项目”、“国家自然科学基金海峡联合基金重点项目”、“国家自然科学优秀青年科学基金项目”、“国家自然科学基金面上项目”等国家级、省部级项目20余项。在植物生殖发育领域有系统的研究，出版专著、教材4部，以第一作者或（并列）通讯作者身份在国际期刊PNAS, Developmental Cell, Current Biology, Plant Cell, Molecular Plant, New Phytologist, PLoS Genetics, Plant Physiology, Plant Journal等发表SCI收录论文140余篇。任《Tropical Plants》、《热带生物学报》副主编，《Physiologia Plantarum》、《Seed Biology》编委，中国植物生理与分子生物学学会、中国园艺学会理事，中国植物学会细胞生物学专业委员会委员，国家自然科学基金二审专家、国家“青年千人”计划会评专家、广西科学技术奖会评专家，福建省遗传学会青年委员会主任，福建省植物学会理事等。培养研究生获得省优秀博士学位论文3篇和省优秀硕士学位论文2篇。入选美国斯坦福大学John P. A. Ioannidis教授团队发布的2024年、2025年全球前2%顶尖科学家榜单（World’s Top 2% Scientists）。
个人简历：
1997.9-2001.7 武汉大学生命科学学院 药学 学士
2001.9-2006.7 武汉大学生命科学学院 发育生物学 博士
2006.7-2009.7 美国亚利桑那大学 植物系 博士后
2009.8-2014.5 中科院上海植物生理生态研究所 副研究员
2015.8-2016.2 美国加州大学河滨分校 访问学者
2014.6-至今 福建农林大学 基因组与生物技术研究中心 教授
研究方向：
1. 植物雌配子体发育的分子机理。
2. 植物抗逆的分子调控。
承担项目清单：
申请人主持或参加科研项目（课题）及人才计划项目情况
1、 国家自然基金面上项目，32670480，水稻miR160a-OsARFs模块与OsERECTA2信号协同调控大孢子母细胞特化的分子机制，2027/01-2029/12，50万元，在研，主持。
2、 福建省科技厅农业科技重大专项专题项目，特色功能型水稻育种新技术新品种及产业化应用子课题，专题任务一：优异新基因的挖掘及其作用机理解析，2025/12-2028/12，130万，在研，主持。
3、 中国烟草总公司福建省公司科技计划项目，2025350000240091，纳米酶级联反应器介导烟草青枯病防治技术开发与应用，2025/04-2028/03，130万元，在研，主持。
4、 福建省农业厅水稻项目，2025/01-2027/12, 240万，在研，主持。
5、 福建省科技厅农业科技重大专项专题项目，百香果火龙果耐高温种质创新与新品种选育，2024/10-2027/09，50万元，在研，主持。
6、 福州市级科技计划项目，藻菌互作资源化处理养猪废水的新型生物学技术研发，2024/08-2026/08，30万元，主持。
7、 福建省科技计划高校产学研合作项目，2024N5004，水稻籼粳交创新育种制种技术集成研究，2024/05-2027/04，50万元，在研，主持。
8、 国家重点研发计划“合成生物学”重点专项项目子课题，植物人工染色体设计与构建——“生殖细胞定向分化”之生殖细胞定向分化等过程中细胞谱系及关键信号通路的可视化研究（2023YFA0913504），2023/12-2028/11，130.00万元，在研，主持。
9、 科技创新2030——农业生物育种重大项目：资源高效利用新基因挖掘与育种价值评价，课题1氮高效利用新基因挖掘与育种价值评价（2023ZD04072）子课题，2023/12-2026/11，70.00万元，在研，主持。
10、 国家自然科学基金面上项目，32270366，拟南芥大孢子母细胞优势表达基因MEG1调控大孢子母细胞特化机理研究，2023/01-2026/12，55.00万元，在研，主持。
11、 横向项目-深圳市百果种业有限公司，KH230046A，百香果的品种研究和育种研发技术服务合作，2023/01-2027/01，75.00万元，在研，主持。
12、 广西科技重大专项子课题，桂科AA22068096-3, 菠萝鲜食优良新品种选育与高效栽培技术示范应用，2022/04-2025/03，60.00万元，在研，主持。
13、 国家自然科学基金面上项目，31970333，拟南芥MADS-box转录因子AGLs调控珠被和雌配子体协同发育，2020/01-2023/12，58.00万元，已结题，主持。
14、 福建省教育厅，福建省本科高校教育教学改革研究项目“新农科背景下农林高校生物学基础课程体系的重构与实践”，FBJG20210078，2021/07-2023/07，9.00万元，已结题，主持。
15、 福建省科技计划高校产学研合作项目，2019N5008，凤梨科植物高效繁殖技术研发和新品种创制及产业化，2019/07-2022/06，40万，已结题，主持。
16、 福建省高校领军人才，660160130,植物雌配子体发育研究，2018/01-2020/12，70万，已结题，主持。
17、 国家自然科学基金委员会与英国皇家学会联合资助的中英人才项目牛顿高级学者基金，31761130074，染色质重塑复合物SWR1通过调节miR398表达调控胚珠发育研究，2017/03-2020/02，11万英镑+42万人民币，已结题，主持。
18、 国家自然科学基金海峡联合基金重点项目，U1605212，菠萝雌配子体发育及演化研究，2017/01-2020/12，216万，已结题，主持。
19、 福建省百人计划，660160050，植物生殖发育机理研究， 2017/01-2019/12，100万，已结题，主持。
20、 国家自然科学优秀青年科学基金，31522009，植物雌性生殖系细胞的形成和分化，2016/01-2018/12，150万，已结题，主持。
21、 国家自然科学基金面上项目，31470284，拟南芥三个转录因子STF1/2/3介导体细胞调控雌配子体发育的分子机理，2015/01-2018/12，85万，已结题，主持。
22、 福建省教育厅新世纪人才项目，JA14096，染色质重塑复合物SWR1调控花瓣发育的分子机理，2014/08-2016/07，5万，已结题，主持。
23、 杂交水稻国家重点实验室（武汉大学）开放课题，KF201306，水稻柱头与花粉识别机理的蛋白质组学研究，2013/01-2013/12，5万，已结题，主持。
24、 国家自然科学基金面上项目，31170290，拟南芥染色质重组复合物SWR1成员ARP6调控植物大孢子发生的分子机理及信号网络研究，2012/01-2015/12，65万，已结题，主持。
25、 国家重大科学研究发展计划子课题，2011CB944600，植物减数分裂过程中染色体相互作用的分子机理，2011/01-2015/08，91万，已结题，主持。
26、 国家重点基础研究发展计划子课题，2012CB944800，植物胚乳发育及储藏物质累积的分子调控机制研究，2012/01-2016/08，90万，已结题，主持。
27、 中科院创新工程青年创新促进会项目，Y119Z61B11，雌配子体发育的基因网络，2011/01-2014/12，40万，已结题，主持。
已发表论文：
2026
1. Mohammad Aslam, Beenish Fakher, Bello Hassan Jakada, Yuan Qin* and Hanyang Cai*. Dual localization of PDI5 couples endoplasmic reticulum proteostasis to meristem organization and meiotic fidelity in Arabidopsis. New Phytologist, 2026, https://doi.org/10.1111/nph.71522.
2. Zhanjie Li*, Xi Guo, Yajun Wu, Heran Tian, Qifu Liang, Lulu Wang, Yongji Huang, Yan Cheng, Yuan Qin*. Ty1-copia and Ty3-gypsy LTR retrotransposon repeats coevolved with two distinct clusters of satellites in Brassica centromeres. Horticulture Research, 2026, doi: 10.1093/hr/uhag335
3. Mohammad Gul Arabzai, Ting Wu, Nazir Khan Mohammadi, Niaz Mohammad Inqilabi, Omotola Adebayo Olunuga, Yuan Qin* and Lulu Wang*. Micropropagation, Somatic Embryogenesis, and Haploid Induction in Passiflora: Advances, Biological Constraints, and Breeding Prospects. Horticulturae, 2026, 12(4): 497.
4. Hanyang Cai*, Youmei Huang, Liping Liu, Han Su, Xinpeng Xi, Yanfen Liu, Thomas Dresselhaus and Yuan Qin. The KLU–PRE module provides positional cues that maintain somatic cell identity around the megasporocyte cell in Arabidopsis. The Plant Cell, 2026, 38(2): koag008.
5. Jiahao Cai, Xingguang Chen, Xueli Li, Mingyue Zhang, Xinqiang Lin, Yile Hu, Haoran Feng, Xinyu Li, Jinbin Hu, Shuqi Yang, Lulu Wang, Xiaoping Niu, Gang Wang, Boping Tang, Sheng Wang, Yuan Qin*, Yan Cheng*. IGD: a multi-omics database for Ipomoea pes-caprae genomic and biological research. BMC Plant Biology, 2026, 26:342
6. He Qing, Alhowty Hanan, Paudel Prodeep, Zhang Xixi, Wei Wenbin, Sipilä Tuomos, Pohl Ehmke, Mähönen Ari Pekka, Paavilainen Ville O., Wightman Raymond, Qin Yuan*, Etchells J. Peter*. A receptor kinase complex refines cambium activity in Arabidopsis. Proceedings of the National Academy of Sciences, 2026, 123(26): e2532481123.
7. Xiaohu Jiang, Han Su, Mengnan Chai, Fan Yang, Hanyang Cai, Yuan Qin* and Maokai Yan*. The Ubiquitin–Proteasome System in Flowering Plant Reproduction: Mechanisms, Functional Diversity, and Regulatory Networks. Plants, 2026, 15(10): 1433.
8. Chun Mei Lai, Xiao Shan Xiao, Li Wei Liu, Xue Li Li, Yu Wei Luo, Yan Qi Liang, Yan Cheng* and Yuan Qin*. The impact of nanodrugs on the metagenome of tobacco rhizosphere soil. Frontiers in Microbiology, 2025, 16: 1715400.
9. Yanhui Liu†, Qing He†, Suzhuo Ma, Man Zhang, Xinxin Huang, Mingjie Wang, Yi Zhong, Yuxuan Li , Yuan Qin, Longxin Qiu and Lulu Wang*. Identification of Passion Fruit ERF Gene Family and the Functional Analysis of PeERF68 in Response to Salt and Heat Stress. Agronomy, 2026, 16(4): 452.
10. Omotola Adebayo Olunuga, Lixin Xu, Ibrahim Adams, Mohammad Gul Arabzai, Ting Wu, Jingai Gao, Fulin Ke, Qiuxia Bai, Shengzhen Chen, Chang An, Yuan Qin* and Lulu Wang*. Integrative Roles of Growth-Regulating Factors (GRFs) in Leaf Morphogenesis, Stress Response, and Crop Regeneration. Agronomy, 2026, 16(6): 675.
11. Jun Wang, Chunxing Dong, Xiaoxue He, Dongpeng Zheng, Xingguang Chen, Jiahao Cai, Gang Wang, Boping Tang, Chunyin Zhang, Lulu Wang, Xiaoping Niu, Chunmei Lai, Yuan Qin* and Yan Cheng*. Genome-Wide Identification and Functional Analysis of the CNGC Gene Family in Suaeda glauca. Biology, 2026, 15(6): 467.
12. Xiaomei Wang, Junzhang Li, Kaichuang Liu, Youmei Huang, Chang An, Yan Cheng, Ping Zheng, Maokai Yan, Biao Deng, Gaifeng Chai, Xiaoping Niu, Hanyang Cai, Yuming Lu, Yuan Qin* and Lulu Wang*. Deciphering the Transcriptomic Dynamics of Self-Incompatibility in Yellow Passion Fruit: Evidence of Modified Sporophytic Mechanism. Plants, 2026, 15(10): 1564.
13. Liuhan Wu, Shuqi Yang, Fang Wang, Wenqi Yang, Chijie Yin, Zexuan Hao, Zhiyong Wang, Rundong Jia, Meiling Fu, Shaojun Wu, Boping Tang, Yuan Qin, Yan Cheng*, and Gang Wang*. Genome-Wide Characterization of TCP Transcription Factors in Common Glasswort (Salicornia europaea) and Their Expression Analysis Under Salt Stress. International Journal of Molecular Sciences, 2026, 27(12): 5514.
14. Jiajia Xiao, Yingying Mei, Xixiang Yi, Guangmou Zhang, Huanzhao Lin, Jinjin Zhang*, Yuan Qin, Chang An*. Bioactivity-guided identification of quality control markers in Chuanxiong Rhizome at its optimal harvest period. Results Chem, 2026: 103077.
15. Siyu Zheng, Afei Liu, Xianhui Zhang, Wenhui Wu, Lihui Chen, Chunmei Lai*, Yuekun Lai*, Kai Liu*. Penguin Skin‐Inspired, Nanoparticle‐Reinforced Hydrogels for Extreme Environment‐Resistant Piezoionic Generation and Sensing. Advanced Functional Materials, 2026, 36(13): e14944.
16. Chang An‡, Bingrui Wang‡, Denglin Li, Junzhang Li, Yongbin Lu, Yixin Yao, Yanxiang Lin, Lin Lu, Yan Cheng, Chongrong Ke, Zongshen Zhang, Ping Zheng* and Yuan Qin*. From folklore to explore: integrating genomic and multiomics data for Clinacanthus nutans provides insights into the evolution and organ-specific therapeutic basis. Horticulture Research, 2026, 13(5): uhag037.
17. Chang An, Wenbo Xu, Yixin Yao, Min Li, Yanxiang Lin, S. V. G. N. Priyadasrhani, Aya Elderini, Yan Cheng, Site Luo, Yuan Qin*, Ping Zheng*. Sequence dynamics and plastome evolution: decoding the complete chloroplast genome of Oenothera drummondii and comparative analysis within Oenothera (Onagraceae). Functional & Integrative Genomics, 2026, 26:2
18. Ping Zheng, Haichao Gong, Denglin Li, Sitong Hu, Ludan Zhang, Jing Wang, Lulu Wang, Yuqin Liang, Biao Deng, Kaichuang Liu, Xiaomei Wang*, Yuan Qin*. Multi-omics dissection of molecular and metabolic drivers of pineapple fruit flesh translucency. Scientia Horticulturae, 2026, 358: 114700.
2025
19. Maokai Yan, Mengnan Chai, Chang An, Xiaohu Jiang, Fan Yang, Xunlian Fang, Tingyu Liu, Yunfei Ju, Boping Tang, Hanyang Cai*, Yuan Qin*. Genome-Wide Identification and Expression Analysis of Thionin Family in Rice (Oryza sativa) and Functional Characterization ofOsTHION15in Drought Stress and ABA Stress. International Journal of Molecular Sciences, 2025,26,3447
20. Chunmei Lai, Xiaoshan Xiao, Liwei Liu, Xinda Lin, Danlin Dou, Hanyang Cai, Zhifeng Mei, Fang Yang, Yan Cheng*, Yuan Qin*. Nanotechnology Strategies in Plant Genetic Engineering: Intelligent Delivery and Precision Editing. Plants, 2025, 14, 3625.
21. Chunmei Lai，Xiaoshan Xiao，Jia Xu，Yuan Qin*. Dual-Enzyme Nanoassemblies of Carbon Dots and Gold for Tumor Microenvironment-Responsive Immunotherapy in Hepatocellular Carcinoma. ACS Applied Materials & Interfaces, 2025, 17 (45): 61647–61660.
22. Ruoyu Liu , Ziyu Meng , Yinan Mu , Ran Zhang , Hanhui Ma , Jingjing Hu , Yanan Wang , Yuxin Shi 1, Yanan Li , Chaofeng Wang , Weini Zhang Longshan Lin , Ping Zheng* , Xinhua Chen*. Chromosome-level reference genome and annotation of the Arctic fish Anisarchus medius. Scientifc Data, 2025, 12:68.
23. Zhimin Hou , Xinkai Cai , Jiahao Wu , Lin Lu , Chaojia Liu , Yangmei Zhang , Shengzhen Chen , Qinglong Yao , Jing Wang , Lulu Wang , Yan Cheng , Ruoyu Liu , Xiaomei Wang , Yuan Qin * , Ping Zheng *. Identification and characterization of HVA22 genes in pineapple (Ananas comosus L.) revealed their potential roles in development regulation and cold stress response. BMC Plant Biology, 2025, 25: 1544
24. Mengnan Chai, Tingyu Liu, Xunlian Fang, Danlin Dou, Zhuangyuan Cao, Ziqi Liu, Xiaoyuan Xu, Simin Ma, Kangmin Zhu, Lian Yu, Yuan Qin, Maokai Yan, Hanyang Cai. Overexpression of GmbZIP59 Confers Broad-Spectrum Stress Resistance in Arabidopsis thaliana and Rice (Oryza sativa). Plants, 2025, 26, 3455
25. Jingai Gao, Dan Zhang, Lixin Xu, Ting Wu, Olunuga Omotola Adebayo, Mohammad Gul Arabzai, Xiaomei Wang, Ping Zheng, Yan Cheng, Boping Tang, Hanyang Cai, Yuan Qin*, and Lulu Wang*. Genome-Wide Identification and Analysis of the WUSCHEL Related Homeobox (WOX) Gene Family in Passion Fruit (Passiflora edulis). Agronomy, 2025, 15, 2766
26. Gaifeng Chai, Dongping Huang, Jingai Gao, Ting Wu, Lixin Xu, Mohammad Gul Arabzai, Omotola Adebayo Olunuga, Xiaomei Wang, Ping Zheng, Yan Cheng, Boping Tang, Hanyang Cai, Yuan Qin, Lulu Wang. Ectopic Expression of Pineapple AcWRKY27 Increases Sensitivity to Abiotic Stress in Rice and Arabidopsis. Physiologia Plantarum, 2025; 177: e70662
27. Xu J, Liu T, Lin H, Huang R, Chen M, Fang P and Niu X (2025) Comprehensive analysis of the Caffeic acid Omethyltransferase gene family in kenaf (Hibiscus cannabinus L.) and their expression characteristics in response to salinity stress. Front. Plant Sci. 16:1678383. doi: 10.3389/fpls.2025.1678383
28. Niu Xiaoping, Jiang Xinni, Li Haoran, Qin Rongjuan, Yuan Qin. TALE Homeodomain Proteins in Plant Reproductive Development and Environmental Stress Resilience. Plant, Cell & Environment, 2025; 1–14
29. Chen Xingguang, Feng Haoran, Liu Mengjuan, Cai Jiahao, Sarwar Rabia, Li Xueli, Zhang Mingyue, Li Xinyu, Lin Xinqiang, Guo Zhonghua, Hu Jinbin, Yang Shuqi, Wang Lulu, Niu Xiaoping, Wang Gang, Tang Boping, Wang Sheng, Qin Yuan, Cheng Yan. Genome-Wide Identification and Evolution of Core Cell Cycle Genes in Marchantia polymorpha: Insights Into Redundancy, Stress, and Functional Evolution. Physiologia Plantarum, 2025, 177: e70485.
30. Zhang Huiying, Dong Guanghui, Liu Dong, Wu Yingzheng, Yan Congyang, Qin Yuan, Wang Jiangxin, Liu Jian. Enhancing lipid accumulation in Phaeodactylum tricornutum using cost-effective antioxidant sodium ascorbate: mechanistic insights. Bioresource Technology, 2025, 434.
31. Zheng, Ping, Wu, Jiahao, Li, Denglin, Xie, Shiyu, Cai, Xinkai, Xiao, Qiang, Wang, Jing, Yao, Qinglong, Chen, Shengzhen, Liu, Ruoyu, Liang, Yuqin, Zhang, Yangmei, Deng, Biao, Qin, Yuan, Wang, Xiaomei. Comparative Metabolomics Analysis of Four Pineapple (Ananas comosus L. Merr) Varieties with Different Fruit Quality. Plants-Basel, 2025, 14(15)
32. An Chang, Xu Wen-Bo, Lu Lin, Li Deng-Lin, Yao Yi-Xin, Lin Yan-Xiang, Yang Cheng-Zi, Qin Yuan, Zheng Ping. Comparative Analysis of Glehnia littoralis from Different Geographic Regions Based on the Characteristics of Chloroplast Genome. Biotechnology Bulletin, 2025
33. Su Han, Jiang Xiaohu, Liu Yanfen, Cao Zhuangyuan, Liu Ziqi, Qin Yuan, He Qing, Cai Hanyang. Advances in ERECTA Family Regulation of Female Gametophyte Development in Arabidopsis thaliana. Plants-Basel, 2025, 14(13)
34. Ou Zitong, Sun Jin, Li Xueli, Feng Haoran, Chen Xingguang, Liang Sisi, Guo Zhonghua, Wang Lulu, Niu Xiaoping, Ma Jinbiao, Wang Sheng, Qin Yuan, Cheng Yan. Genome-Wide Identification, Characterization, and Expression Analysis of NRT Gene Family in Suaeda glauca, Biology-Basel, 2025, 14(8)
35. Zhang Huiying, Wu Yingzheng, Liu Dong, Feng Siran, Xuan Xiaoxin, Dong Guanghui, Cheng Junyi, Qin Yuan, Ngo Huu Hao. Insights into microalgal biotechnology: Current applications, key challenges, and future prospects. Journal of Environmental Management, 2025, 394.
36. Yulai Wu†, Chang An†, Yanjie Wang, Yuqi Sun, Changbin Liu, Bingrui Wang, Yuan Qin*and Zongshen Zhang*. Dendrobium huoshanense In Vitro Culture and Selenium Metabolism: Speciation Mechanisms, Horticulturae, 2025, 11, 1263. DOI10.3390/horticulturae11101263
37. Chang An, Denghang Wu, Ningwei Li, Yixin Yao, Lin Lu, Yan Cheng, Zongshen Zhang, Ping Zheng* and Yuan Qin*. The basic helix-loop-helix (bHLH) gene family in Clinacanthus nutans: insights into tissue-specific expression, stress responses, and methyl jasmonate (MeJA) responsiveness, Medicinal Plant Biology, 2025, 4: e032 DOI10.48130/mpb-0025-0030
38. Mingliang Guo, Chun Zheng, Chao Shi, Xiaozhuan Lu, Zeyuan She, Shuyu Jiang, Dagang Tian* and Yuan Qin*. The OsZHD1 and OsZHD2, two zinc finger homeobox transcription factor, redundantly control grain size by influencing cell proliferation in rice. Rice, 2025, 18(1):20.
39. Mohammad Gul Arabzai, Dongping Huang, Nazir Khan Mohammadi, Jingai Gao, Xiaomei Wang, Ping Zheng, Yuan Qin* & Lulu Wang*. Techniques and advantages of microspore culture for crop improvement. Plant Growth Regulation, 2025, 105:903-918.
40. Chunmei Lai, Xiaoshan Xiao, Jingyi Chen, Wenyun He, Sisi Wang, Yuan Qin*. Revolutionizing nanozymes: The synthesis, enzyme-mimicking capabilities of carbon dots, and advancements in catalytic mechanisms. International Journal of Biological Macromolecules, 2025, 293: 139284
41. Xinni Jiang, Jie Miao, Weifan Zu, Ruohan Zhou, Lexin Zheng, Ying Wei, Chunmei Lai, Rongjuan Qin, Ping Zheng, Xiuqing Wei, Jiahui Xu, Yuan Qin and Xiaoping Niu. Functional Characterization of KNOX and BELL Genes in Temperature-Responsive Floral Morphogenesis of Passion Fruit (Passiflora edulis). Plants, 2025, 14(10):1440.
42. Yanfen Liu, Qing He, Han Su, Xinpeng Xi, Xiaoyuan Xu, Yuan Qin and Hanyang Cai. Advances in Small RNA Regulation of Female Gametophyte Development in Flowering Plants. Plants, 2025;14(9):1286.
43. Mengnan Chai, Fan Yang, Shuping Cai, Tingyu Liu, Xiaoyuan Xu, Youmei Huang, Xinpeng X,Jiahong Yang, Zhuangyuan Cao, Ling Sun, Danlin Dou, Xunlian Fang, Maokai Yan and Hanyang Cai. Overexpression of the Transcription Factor GmbZIP60 Increases Salt and Drought Tolerance in Soybean (Glycine max). International Journal of Molecular Sciences, 2025, 26(7):3455.
44. Xinkai Cai, Denglin Li, Chaojia Liu, Jiayi Chen, Xiuqing Wei, Sitong Hu, Lin Lu, Shengzhen Chen, Qinglong Yao, Shiyu Xie, Xiaowen Xu, Ruoyu Liu, Yuan Qin*, Ping Zheng*. Identification and characterization of GRAS genes in passion fruit (Passiflora edulis Sims) revealed their roles in development regulation and stress response. Plant Cell Reports, 2025，44(2):46.
45. Chang An, Lin Lu, Yixin Yao, Ruoyu Liu, Yan Cheng, Yanxiang Lin, Yuan Qin*, Ping Zheng*. Selection and Validation of Reference Genes in Clinacanthus nutans Under Abiotic Stresses, MeJA Treatment, and in Different Tissues. International Journal of Molecular Sciences, 2025;26(6):2483.
46. Hanyang Cai *, Kaichuang Liu, Suzhuo Ma, Han Su, Jiahong Yang, Ling Sun, Ziqi Liu and Yuan Qin *. Gibberellin and cytokinin signaling antagonistically control female-germline cell specification in Arabidopsis. Developmental Cell, 2025, 60(5), 706-722.e7.
47. Liping Liu, Yuan Qin, and Hanyang Cai*. Understanding the Functional Megaspore Development: Current Status/Progress, Perspectives. Plant, Cell & environment, 2025, 1–7.
48. Yan M, Chai M, An C, Jiang X, Yang F, Fang X, Liu T, Ju Y, Tang B, Cai H*, Qin Y*. Genome-Wide Identification and Expression Analysis of Thionin Family in Rice (Oryza sativa) and Functional Characterization of OsTHION15 in Drought Stress and ABA Stress. International Journal of Molecular Sciences, 2025;26(7):3447.
49. Chun-Mei Lai, Wei-Ji Chen, Di Xu*, Yuan Qin*, Yue-Kun Lai*, Shao-Hua He*, Innovative Hydrogel Design: Tailoring Immunomodulation for Optimal Chronic Wound Recovery. Advanced Science, 2025;12(2):2412360.
50. Guo Z, Sun J, Chen X, Li H, Liang S, Liu F, Qu T, Wang H, Li X, Ou Z, Feng H, Ma J, Wang S, Wang L, Tang B, Wang G, Qin Y, Cheng Y. Comparative analysis of HKT genes in Ipomoea pes-caprae unveils conserved Na+/K+ symporter functions within the gene family. Frontiers in Plant Science, 2025, 16.
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53. Wang Y, Lei J, Liu J, Gao M, Cheng J, Chang J, Zhang R, Ren C, Wang D, Wang M, Song Y, Zeng R, Qin Y, Zhang H. Dual Localization and Functional Divergence of V-ATPase Subunit A: Nuclear Shuttling Mediates Distinct Roles in Dark- and MeJA-Induced Leaf Senescence. Journal of Agricultural and Food Chemistry, 2025, 73 (17): 10157–10171.
54. Yang H, Wei X, Wang L, Zheng P, Li J, Zou Y, Wang L, Feng X, Xu J, Qin Y, Zhuang Y. Functional Characterization of PeVLN4 Involved in Regulating Pollen Tube Growth from Passion Fruit. International Journal of Molecular Sciences. 2025, 26(5):2348.
55. 安昌，徐文波，陆琳，李登麟，姚艺新，林彦翔，杨成梓，秦源，郑平. 不同产地珊瑚菜叶绿体基因组特征的差异性研究. 生物技术通报，2025, 41(6):229-242.
56. 李占杰，贾琪，郑婷婷，王伟，张冲，秦源*. 芸薹属植物在遗传学实验教学中的应用探索. 遗传（北京），2025, 47(7):813-820
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58. 张文斌，吴胜芳，叶金巧，郑平，王小媚，郑振江，秦源. 百香果新品种福香1号的选育.中国果树,2025,(08):154-156. DOI:10.16626/j.cnki.issn1000-8047.2025.08.025.
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59. Zhou Qiao, Priyadarshani SVGN, Qin Rongjuan, Cheng Han, Luo Tiantian, Wai MyatHnin, Mohammadi Mohammad Aqa, Liu Yanhui, Liu Chang and Cai Hanyang, Wang, Xiaomei,Liu, Yeqiang,Qin Yuan* and Wang Lulu*. (2023) Acwrky28 Mediated Activation of Accpk Genes Confers Salt Tolerance in Pineapple (Ananas Comosus). Horticultural Plant Journal, 2024, 10 (2): 398e412.
60. Meixia Chen *, Hui Lin, Weifan Zu, Lulu Wang, Wenbo Dai, Yulin Xiao, Ye Zou, Chengkang Zhang, Wei Liu and Xiaoping Niu*. Evaluating Native Bacillus Strains as Potential Biocontrol Agents against Tea Anthracnose Caused by Colletotrichum fructicola. Plants-Basel, 2024, 13, 2889.
61. Dan Zhang, Lumiao Du, Jinting Lin, Lulu Wang, Ping Zheng, Biao Deng, Wenbin Zhang, Weiqiang Su, Yanhui Liu, Yuming Lu, Yuan Qin* and Xiaomei Wang*. Genome-wide identification and expression analysis of calmodulin and calmodulinlike genes in passion fruit (Passiflora edulis) and their involvement in flower and fruit development. BMC Plant Biology, (2024) 24:626.
62. Myat Hnin Wai , Tiantian Luo , S. V. G. N. Priyadarshani , Qiao Zhou, Mohammad Aqa Mohammadi , Han Cheng, Mohammad Aslam , Chang Liu, Gaifeng Chai ,Dongping Huang , Yanhui Liu, Hanyang Cai , Xiaomei Wang, Yuan Qin* and Lulu Wang*. Overexpression of AcWRKY31 Increases Sensitivity to Salt and Drought and Improves Tolerance to Mealybugs in Pineapple. Plants (Basel), 2024, 13(13):1850.
63. Hou Zhimin, Liang Jianxiang, Cai Xinkai, Lin Jingting, Wang Xiaomei, Liu Ruoyu, Lu Lin, Chai Gaifeng, An Chang, Chen Shengzhen, Qin, Yuan*, Zheng Ping*. PeHVA22 gene family in passion fruit (Passiflora edulis): initial characterization and expression profiling diversity. Frontiers in Plant Science, 2024: 14
64. Chang An，Jingyi Liao，Lin Lu， Xinkai Cai, Ruoyu Liu, Shengzhen Chen, Mengqian Shen, Xiaomei Wang，Yuan Qin* and Ping Zheng*.From gene expression to flower patterns: genome-wide characterization of the MADS-box gene family in passion fruit (Passiflora edulis). Tropical Plants 2024, 3: e004.
65. Mohammad Aqa Mohammadi, Mengjie Xu, Yining Wang, Zihao Zhang, Myat Hnin Wai, Hafiz Muhammad Rizwan, Chang An, Mohammad Aslam, Chunyin Zhang, Gang Wang, Yuan Qin*, Yan Cheng*. A highly efficient organogenesis system based on 6-Benzylaminopurine and Indole-6-butyric acid in Suaeda glauca-medicinal halophyte under varying photoperiods. Industrial Crops and Products, 2024, 216(15): 118672.
66. Jiahao Wu, Quanyin Yang, Wanyue Zhao, Xue Miao, Yuan Qin*, Yan Qu*, and Ping Zheng*. Assessment of Population Genetic Diversity of Medicinal Meconopsis integrifolia (Maxim.) Franch. Using Newly Developed SSR Markers. Plants, 2024, 13(18), 2561.
67. Chang An, Kangzhuo Ye, Runfa Jiang, Jiayi Chen, Yixin Yao, Lin Lu, Yan Cheng, Ruoyu Liu, Xiaofen Liu, Heming Zhao, Yuan Qin* and Ping Zheng*. Cytological analysis of flower development, insights into suitable growth area and genomic background: implications for Glehnia littoralis conservation and sustainable utilization. BMC Plant Biology, 2024, 24(1), 895.
68. 邓彪，刘业强，徐健，陈仁雄，张丹，郑平，王路路，覃植盛，韦建烈，杜路淼，秦源，王小媚*.两种催花剂处理对“台农4号”菠萝催花效果的影响.中国南方果树，2024,53(2):91-96,102.
69. 张丹, 郑平, 邓彪, 柴改凤, 安昌, 邓考, 张文斌, 陆宇明, 卢翔宇, 王小媚*, 秦源*. 百香果（Passiflora edulis）R2R3-MYB基因家族的结构和功能分析. 果树学报，2024，41(01):12-29.
70. 杜路淼, 邓彪, 王小媚*, 张丹, 安昌, 秦源, 蔡昭艳, 陆宇明, 董龙, 郑平, 王路路, 齐金岗, 苏伟强, 胡泊, 王露儒, 黄华彬, 王金都. 8个西番莲品种的开花特性与花粉柱头形态观察.分子植物育种, 2024, 22(01):213-221.
71. 张丹，邓彪，刘业强，齐金岗，刘润泽，王路路，郑平，杜路淼，王露儒，秦源，王小媚*.菠萝抗寒研究进展. 中国南方果树，2024, 53(01):239-247.
72. 张文斌，吴胜芳 ，叶金巧，郑 平，王小媚，郑振江，秦源*.百香果鲜食加工新品种福蜜1号的选育.中国果树，2024(6): 154-156.
73. 杨嘉泓，李婧怡，吴佳昊, 黄幼梅，刘艳芬，秦源*，蔡汉阳*.生长素信号途径参与调控拟南芥雌配子体发育研究进展.生物技术通报,2024, 40(07):19-27.
74. 马苏卓，苏涵，刘开创, 黄幼梅，柴梦楠，秦源，蔡汉阳*.细胞分裂素信号调控植物雌配子体发育的研究进展.福建农林大学学报(自然科学版),2024,53(02):153-158.
75. 叶金巧, 张文斌, 吴胜芳, 王小媚, 郑平, 王路路, 郑振江, 秦源*. 西番莲抗茎基腐病新品种‘福砧2号’的选育.中国果菜, 2024, 44(11):71-74.
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76. Liang J, Fang Y, An C, Yao Y, Wang X, Zhang W, Liu R, Wang L, Aslam M and Cheng Y, Qin Y* and Zheng P*. Genome-Wide Identification and Expression Analysis of the Bhlh Gene Family in Passion Fruit (Passiflora Edulis) and its Response to Abiotic Stress. Int J Biol Macromol, 2023, 225, 389-403.
77. Huang Y, Xi X, Chai M, Ma S, Su H, Liu K, Wang F, Zhu W, Liu Y, Qin Y* and Cai H*. Chromatin Remodeling Complex Swr1 Regulates Root Development by Affecting the Accumulation of Reactive Oxygen Species (Ros). Plants (Basel), 2023, 12(4).
78. Youmei Huang, Liping Liu , Mengnan Chai, Han Su, Suzhuo Ma, Kaichuang Liu, Yaru Tian,Zhuangyuan Cao, Xinpeng Xi, Wenhui Zhu, Jingang Qi, Ravishankar Palanivelu , Yuan Qin* and Hanyang Cai*. Epigenetic regulation of female germline development through ERECTA signaling pathway. New Phytologist, 2023, 240(3), 1015-1033.
79. Fakher B, Ashraf MA, Wang L, Wang X, Zheng P, Aslam M*, Qin Y*. Pineapple SWEET10 is a glucose transporter. Horticulture Research, 2023, 10(10):uhad175. doi: 10.1093/hr/uhad175.
80. Cai H, Huang Y, Liu L, Zhang M, Chai M, Xi X, Aslam M, Wang L, Ma S, Su H, Liu K, Tian Y, Zhu W, Qi J, Dresselhaus T, Qin Y*. Signaling by the EPFL-ERECTA family coordinates female germline specification through the BZR1 family in Arabidopsis. Plant Cell, 2023, 35(5):1455-1473. doi:10.1093/plcell/koad032
81. Cai Hanyang, Liu Liping, Ma Suzhuo, Aslam Mohammad and Qin, Yuan*. Insights into the role of phytohormones in plant female germline cell specification. Current Opinion in Plant Biology, 2023, 75, 102439.
82. Cheng Yan, Sun Jin, Jiang Mengwei,Luo Ziqiang, Wang Yu, Liu Yanhui, Li Weiming, Hu Bing, Dong Chunxing, Ye Kangzhuo, Li Zixian,Deng Fang,Wang Lulu,Cao Ling,Cao Shijiang,Pan Chenglang,Zheng Ping,Wang Sheng,Aslam Mohammad,Wang Hong,Qin, Yuan *. Chromosome-scale genome sequence of Suaeda glauca sheds light on salt stress tolerance in halophytes. Horticulture Research, 2023, 10(9):uhad161. doi: 10.1093/hr/uhad161.
83. Cheng Y#, Wang Y, Sun J, Liao Z, Ye K, Hu B, Dong C, Li Z, Deng F, Wang L, Cao S, Pan C, Zheng P, Cai L, Cao L, Wang S, Aslam M, Wang H, Qin Y*. Unveiling the genomic blueprint of salt stress: insights from Ipomoea pes-caprae L. Seed Biology, 2023, 2:21.
84. Mohammadi MA, Wai MH, Rizwan HM, Qarluq AQ, Xu M, Wang L, Cheng Y, Aslam M, Zheng P, Wang X, Zhang W, Qin Y*. Advances in micropropagation, somatic embryogenesis, somatic hybridizations, genetic transformation and cryopreservation for Passiflora improvement. Plant Methods, 2023, 19(1):50. doi: 10.1186/s13007-023-01030-0.
85. Zhang Y, Ye T, She Z, Huang S, Wang L, Aslam M, Qin R, Wang X, Qin Y*, Niu X*. Small Auxin Up RNA (SAUR) gene family identification and functional genes exploration during the floral organ and fruit developmental stages in pineapple (Ananas comosus L.) and its response to salinity and drought stresses. Int J Biol Macromol, 2023, 237:124061. doi: 10.1016/j.ijbiomac.2023.124061.
86. Ye K, Dong C, Hu B, Yuan J, Sun J, Li Z, Deng F, Fakher B, Wang L, Pan C, Aslam M, Qin Y*, Cheng Y*. The genome size, chromosome number and the seed adaption to long-distance dispersal of Ipomoea pes-caprae (L.). Front Plant Sci, 2023, 14:1074935. doi: 10.3389/fpls.2023.1074935.
87. Wang Y, Xu J, Hu B, Dong C, Sun J, Li Z, Ye K, Deng F, Wang L, Aslam M, Lv W, Qin Y*, Cheng Y*. Assembly, annotation, and comparative analysis of Ipomoea chloroplast genomes provide insights into the parasitic characteristics of Cuscuta species. Front Plant Sci, 2023, 13:1074697.
88. Zheng, P., Shen, M., Liu, R., Cai, X., Lin, J., Wang, L., Chen, Y., Chen, G., Cao, S.*, Qin, Y.*, Revealing Further Insights into Astringent Seeds of Chinese Fir by Integrated Metabolomic and Lipidomic Analyses. International Journal of Molecular Sciences, 2023, 24 (20), 15103.
89. Liang, J., Lu, L., Zhang, W., Chi, M., Shen, M., An, C., Chen, S., Wang, X., Liu, R., Qin, Y.*, Zheng, P.*, Comprehensive characterization and expression analysis of enzymatic antioxidant gene families in passion fruit (Passiflora edulis). iScience, 2023, 26 (11).
90. Liu Yanhui, Priyadarshani S V G N, Chi Meirong, Yan Maokai, Mohammadi Mohammad Aqa, Zhang Man, Zhou Qiao, Wang Lulu, Luo Tiantian, Wai Myat Hnin, Wang, Xiaomei,Cai, Hanyang,Wang, Haifeng* and Qin, Yuan*. Epigenetic Modification Mechanisms of Chloroplasts Mutants in Pineapple Leaves During Somatic Regeneration. Horticultural Plant Journal, 2023, 9(3), pp. 509-22.
91. Wang L, Liu Y, Chai G, Zhang D, Fang Y, Deng K, Aslam M, Niu X, Zhang W, Qin Y* and Wang X*. Identification of Passion Fruit Hsf Gene Family and the Functional Analysis of Pehsf-C1a in Response to Heat and Osmotic Stress. Plant Physiol Biochem, 2023, 200, pp. 107800.
92. Zhu W, Qi J, Chen J, Ma S, Liu K, Su H, Chai M, Huang Y, Xi X, Cao Z, Qin Y, Cai H*. Identification of GA2ox Family Genes and Expression Analysis under Gibberellin Treatment in Pineapple (Ananas comosus (L.) Merr.). Plants, 2023, 12(14):2673.
93. 安昌，陆琳，叶康卓，陈盛圳，王炳锐，郑平，秦源*. 药用植物鳄嘴花(忧遁草)的研究概况及质量标志物预测分析．中华中医药学刊, 2023, 41(12):25-35.
94. 安昌,陆琳,沈梦千,陈盛圳,叶康卓,秦源*,郑平*.植物bHLH基因家族研究进展及在药用植物中的应用前景.生物技术通报,2023,39(10):1-16.
95. 安昌,庄怡雪,郑平,林彦翔,杨成梓,秦源*.福建省维管植物名录.生物多样性, 2023, 31(6), pp. 15-23.
96. 张文斌，叶金巧，吴胜芳，王小媚，郑振江，郑平，王路路，秦源*. 抗茎基腐病百香果新品种福砧1号的选育.中国果树，2023, (7)：91-95.
97. 沈梦千,安昌,秦源*,郑平*.植物生长和胁迫响应的脂质组学解析：脂质调控综览.基因组学与应用生物学,2024,43(5):738-754.
98. 张丹,郑平,邓彪,柴改凤,安昌,邓考,张文斌,陆宇明,卢翔宇,王小媚*,秦源*.百香果（Passiflora edulis）R2R3-MYB基因家族的结构和功能分析.果树学报, 2024，41(1)：12-29.
99. 卢翔宇,邓彪,安昌,郑平,张丹,苏伟强,王金都,陆宇明,秦源*,王小媚*.金都百香3号冬季果实生长发育及其品质形成规律.南方农业学报, 2023,54(4):1175-1185.
100. 张惠莹,刘建,陈冬梅,宋圆圆,曾任森,秦源*. 植物生理生化实验课程思政教学设计.实验科学与技术, 2023, 21(4) : 75-80.
2022
101. Cai H, Liu L, Huang Y, Zhu W, Qi J, Xi X, Aslam M, Dresselhaus T, Qin Y*. Brassinosteroid signaling regulates female germline specification in Arabidopsis. Current Biology, 2022, 32(5):1102-1114.e5. doi: 10.1016/j.cub.2022.01.022.
102. Cai H, Ma S, Su H, Liu K, Aslam M, Qin Y*. Positional signals establishment in the regulation of female germline specification. Seed Biology, 2022, 1:6. https://doi.org/10.48130/SeedBio-2022-0006
103. Fakher B, Jakada BH, Greaves JG, Wang L, Niu X, Cheng Y, Zheng P, Aslam M, Qin Y*, Wang X*. Identification and expression analysis of pineapple sugar transporters reveal their role in the development and environmental response. Frontiers in Plant Science, 2022, 13:964897. doi: 10.3389/fpls.2022.964897.
104. Aslam M, Fakher B, Qin Y*. Big Role of Small RNAs in Female Gametophyte Development. International Journal of Molecular Sciences, 2022, 23(4):1979. doi: 10.3390/ijms23041979.
105. Aslam M, She Z, Jakada BH, Fakher B, Greaves JG, Yan M, Chen Y, Zheng P, Cheng Y, Qin Y*. Interspecific complementation-restoration of phenotype in Arabidopsis cuc2cuc3 mutant by sugarcane CUC2 gene. BMC Plant Biology, 2022, 22(1):47. doi: 10.1186/s12870-022-03440-z.
106. Aslam M, Fakher B, Greaves J, Jakada B, Qin R, Qin Y*. A CBL-interacting protein kinase, AcCIPK18, from Ananas comosus regulates tolerance to salt, drought, heat stress and Sclerotinia sclerotiorum infection in Arabidopsis. Environmental and Experimental Botany, 2022, 194:104728.
107. Aslam M, Fakher B, Ashraf MA, Cheng Y, Wang B*, Qin Y*. Plant Low-Temperature Stress: Signaling and Response. Agronomy, 2022, 12, 702.
108. Guo M, Zhang W, Mohammadi MA, He Z, She Z, Yan M, Shi C, Lin L, Wang A, Liu J, Tian D, Zhao H, Qin Y*. OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice. Frontiers in Plant Science, 2022, 13:873993.
109. Guo M, Zhao H, He Z, Zhang W, She Z, Mohammadi MA, Shi C, Yan M, Tian D, Qin Y*. Comparative Expression Profiling of Snf2 Family Genes During Reproductive Development and Stress Responses in Rice. Frontiers in Plant Science, 2022, 13:910663.
110. Ye L, Cao L, Zhao X, Guo X, Ye K, Jiao S, Wang Y, He X, Dong C, Hu B, Deng F, Zhao H, Zheng P, Aslam M, Qin Y*, Cheng Y*. Investigation of the JASMONATE ZIM-DOMAIN Gene Family Reveals the Canonical JA-Signaling Pathway in Pineapple. Biology (Basel), 2022,11(3):445.
111. She Z, Huang Y, Aslam M, Wang L, Yan M, Qin R, Chen Y, Qin Y*, Niu X*. Expression characterization and cross‑species complementation uncover the functional conservation of YABBY genes for leaf abaxial polarity and carpel polarity establishment in Saccharum spontaneum. BMC Plant Biology, 2022, 22:124.
112. Liu, Y.; Yuan, J.; Zhang, D.;Deng, K.; Chai, G.; Huang, Y.; Ma, S.; Qin, Y.*; Wang, L*. Genome-Wide Identification and Characterization of the SBP Gene Family in Passion Fruit (Passiflora edulis Sims). Int. J. Mol. Sci., 2022, 23, 14153.
113. Chen B, Dang X, Bai W, Liu M, Li Y, Zhu L, Yang Y, Yu P, Ren H, Huang D, Pan X, Wang H, Qin Y, Feng S, Wang Q, Lin D. The IPGA1-ANGUSTIFOLIA module regulates microtubule organisation and pavement cell shape in Arabidopsis. New Phytologist, 2022, 236: 1310-1325.
114. Huang Y, Chen F, Chai M, Xi X, Zhu W, Qi J, Liu K, Ma S, Su H, Tian Y, Zhang H, Qin Y, Cai H*. Ectopic Overexpression of Pineapple Transcription Factor AcWRKY31 Reduces Drought and Salt Tolerance in Rice and Arabidopsis. International Journal of Molecular Sciences, 2022, 23(11):6269.
115. Zheng P, Sun H, Liu J, Lin J, Zhang X, Qin Y, Zhang W, Xu X, Deng X, Yang D, Wang M, Zhang Y, Song H, Huang Y, Orozco-Obando W, Ming R*, Yang M*. Comparative analyses of American and Asian lotus genomes reveal insights into petal color, carpel thermogenesis and domestication. The Plant Journal, 2022, 110(5):1498-1515.
116. 安昌, 秦源, 方韵颖, 屈祺, 王炳锐, 郑平. 药用植物三萜类生物合成途径及关键酶基因研究进展.中国中药杂志, 2022 , (24),6560-6572.
117. 李俊璋，秦源，肖强，安昌，廖静怡，郑平．景天酸代谢植物分子生物学研究进展及应用潜力．园艺学报, 2022,49(12):2597-2610.
118. 黄幼梅, 柴梦楠, 席鑫鹏, 朱文辉, 齐金岗, 秦源, 蔡汉阳. (2022) 拟南芥EFP／EFPL基因对核盘菌抗性的功能分析. 福建农林大学学报（自然科学版）, 2022,51(4):486-492.
2021
119. Cai H, Liu L, Zhang M, Chai M, Huang Y, Chen F, Yan M, Su Z, Henderson I, Palanivelu R, Chen X, Qin Y*. Spatiotemporal control of miR398 biogenesis via chromatin remodeling and kinase signaling ensures proper ovule development. Plant Cell, 2021, 33(5):1530-1553. doi: 10.1093/plcell/koab056.
120. Cai H, Huang Y, Chen F, Liu L, Chai M, Zhang M, Yan M, Aslam M, He Q, Qin Y*. ERECTA signaling regulates plant immune responses via chromatin-mediated promotion of WRKY33 binding to target genes. New Phytologist, 2021, 230(2):737-756. DOI: 10.1111/NPH.17200.
121. Cai H, Chai M, Chen F, Huang Y, Zhang M, He Q, Liu L, Yan M, Qin Y*. HBI1 acts downstream of ERECTA and SWR1 in regulating inflorescence architecture through the activation of the brassinosteroid and auxin signaling pathways. New Phytologist, 2021, 229(1):414-428.
122. Zhao L, Liu L, Liu Y, Dou X, Cai H, Aslam M, Hou Z, Jin X, Li Y, Wang L, Zhao H, Wang X, Sicard A, Qin Y*. Characterization of germline development and identification of genes associated with germline specification in pineapple. Horticulture Research, 2021, 8(1):239. doi: 10.1038/s41438-021-00669-x.
123. Hou Z, Liu Y, Zhang M, Zhao L, Jin X, Liu L, Su Z, Cai H, Qin Y*. High-throughput single-cell transcriptomics reveals the female germline differentiation trajectory in Arabidopsis thaliana. Communications Biology, 2021, 4(1):1149.
124. Zhang M, Liu Y, Li Z, She Z, Chai M, He Q, Huang Y, Chen F, Wang B*, Cai H*, Qin Y*. The bZIP transcription factor GmbZIP15 facilitates resistance against Sclerotinia sclerotiorum and Phytophthora sojae infection in soybean. iScience, 2021, 24, 102642.
125. Cheng Y, He X, Priyadarshani SVGN, Wang Y, Ye Li, Ye K, Zhou Q, Luo Z, Deng F, Cao L, Zheng P, Aslam M, Qin Y*. Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca. BMC Genomics, 2021, 22:167.
126. Aslam M, Huang X, Yan M, She Z, Lu X, Fakher B, Chen Y, Li G*, Qin Y*. TRM61 is essential for Arabidopsis embryo and endosperm development. Plant Reproduction, 2021, 35:31-46.
127. Cheng Y, Zhou Q, Li W, Cheng H, Mohammadi M, Liu Y, Deng F, S.V.G.N. Priyadarshani, Sun J, Ye L, He X, Cao L, Cao S, Zheng P, Aslam M, Zhao H, Qin Y*. De novo transcriptome assembly and gene expression profiling of Ipomoea pes-caprae L. under heat and cold stresses. Scientia Horticulturae, 2021, 289,110379.
128. Mohammadi MA, Cheng Y, Aslam M, Jakada BH, Wai MH, Ye K, He X, Luo T, Ye L, Dong C, Hu B, Priyadarshani SVGN, Wang-Pruski G*, Qin Y*. ROS and Oxidative Response Systems in Plants Under Biotic and Abiotic Stresses: Revisiting the Crucial Role of Phosphite Triggered Plants Defense Response. Frontiers in Microbiology, 2021, 12:631318. doi: 10.3389/fmicb.2021.631318.
129. Wang L, Liu Y, Aslam M, Jakada B, Qin Y*, Cai H*. The Glycine-Rich Domain Protein GRDP2 Regulates Ovule Development via the Auxin Pathway in Arabidopsis. Frontiers in Plant Science, 2021,12: 698487.
130. Shi Y, Zhang X, Chang X, Yan M, Zhao H, Qin Y*, Wang H*. Integrated analysis of DNA methylome and transcriptome reveals epigenetic regulation of CAM photosynthesis in pineapple. BMC Plant Biol, 2021, 21:19.
131. Liu Y., Aslam M., Yao L., Zhang M., Wang L., Chen H., Huang Y., Qin Y*, Niu X.* Genomic analysis of SBP gene family in Saccharum spontaneum reveals their association with vegetative and reproductive development. BMC Genomics, 2021, 22(1):767.
132. Li D, Mohammadi M, Qin Y*, Zhang Z*. Somatic Embryogenesis and Indirect In Vitro Plant Regeneration in Amorphophallus konjac K. Koch by One-Step Seedling Formation. Horticulturae, 2021, 7, 497.
133. Jin X, Liu Y, Hou Z, Zhang Y, Fang Y, Huang Y, Cai H, Qin Y*, Cheng Y*. Genome-Wide Investigation of SBT Family Genes in Pineapple and Functional Analysis of AcoSBT1.12 in Floral Transition. Frontiers in Genetics, 2021, 12: 730821.
134. Zhao H, Maokai Y, Cheng H, Guo M, Liu Y, Wang L, Chao S, Zhang M, Lai L, Qin Y*. Characterization of auxin transporter AUX, PIN and PILS gene families in pineapple and evaluation of expression profiles during reproductive development and under abiotic stresses. PeerJ, 2021, 9:e11410.
135. Wang L, Liu Y, Chai M, Chen H, Aslam M, Niu X, Qin Y*, Cai H*. Genome-wide identification, classification, and expression analysis of the HSF gene family in pineapple (Ananas comosus). PeerJ, 2021, 9:e11329.
136. Yan M., Jin X., Liu Y., Chen H., Ye T., Hou Z., Su Z., Chen Y., Aslam M., Qin Y*., and Niu X.* Identification and evaluation of the novel genes for transcript normalization during female gametophyte development in sugarcane. Peer J, 2021, 9: e12298.
137. Jiang X, Mohammadi M, Qin Y*, Zhang Z*. Towards Understanding the Involvement of H+-ATPase in Programmed Cell Death of Psammosilene tunicoides after Oxalic Acid Application. Molecules, 2021, 26, 6957.
138. Zhou Q, Liu L, Cheng H, Li Z, Wai M, Luo T, Jin X, Zhao H, Priyadarshani SVGN*, Qin Y*. Genome‑wide Identification and Expression Pattern Analysis of the HD‑Zip Transcription Factor Family in Pineapple (Ananas Comosus). Tropical Plant Biology, 2021, 14:120–131.
139. Liu L, Chai M, Huang Y, Qi J, Zhu W, Xi X, Chen F, Qin Y, and Cai H*. SDG2 regulates Arabidopsis inflorescence architecture through SWR1-ERECTA signaling pathway. IScience, 2021, 24:103236.
140. Zhou X, Lu J, Zhang Y, Guo J, Lin W, Van Norman JM, Qin Y, Zhu X, Yang Z*. Membrane receptor-mediated mechano-transduction maintains cell integrity during pollen tube growth within the pistil. Developmental Cell, 2021, 56(7):1030-1042.
141. 李占杰，秦源. 染色质可及性与植物基因表达调控. 植物学报, 2021, 56 (6): 664–675.
2020
142. Su Z, Wang N, Hou Z, Li B, Li D, Liu Y, Cai H, Qin Y*, Chen X*. Regulation of Female Germline Specification via Small RNA Mobility in Arabidopsis. Plant Cell, 2020, 32(9):2842-2854 , doi:10.1105/tpc.20.00126.
143. Zhao H, Guo M, Yan M, Cheng Y, Liu Y, She Z, Lai L, Shi C, Zhang M, Li Y, Lin D, Qin Y*. Comparative expression profiling reveals genes involved in megasporogenesis. Plant Physiology, 2020, 182: 2006-2024.
144. Liu L, Zhao L, Chen P, Cai H, Hou Z, Jin X, Aslam M, Chai M, Lai L, He Q, Liu Y, Huang X, Chen Hui, Chen Y, Qin Y*. ATP binding cassette transporters ABCG1 and ABCG16 affect reproductive development via auxin signalling in Arabidopsis. The Plant Journal, 2020, 102, 1172–1186.
145. Wang L, Li Y, Jin X, Liu L, Dai X, Liu Y, Zhao L, Zheng P, Wang X, Liu Y, Lin D, Qin Y*. Floral transcriptomes reveal gene networks in pineapple floral growth and fruit development. Communications Biology, 2020, 3:500.
146. Aslam M, Jakada B, Fakher B, Greaves J, Niu X, Su Z, Cheng Y, Cao S, Wang X*, Qin Y*. Genome-wide study of pineapple (Ananas comosus L.) bHLH transcription factors indicates that cryptochrome-interacting bHLH2 (AcCIB2) participates in flowering time regulation and abiotic stress response. BMC Genomics, 2020, 22;21(1):735.
147. Zhang M, Liu Y, He Q, Chai M, Huang Y, Chen F, Wang X, Liu Y, Cai H*, Qin Y*. Genome-wide investigation of calcium-dependent protein kinase gene family in pineapple: evolution and expression profiles during development and stress. BMC Genomics, 2020, 23;21(1):72.
148. Chen H, Lai L, Li L, Jakada B, Huang Y, He Q, Chai M, Niu X*, Qin Y*. AcoMYB4, an Ananas comosus L. MYB transcription factor, functions in osmotic stress through negative regulation of ABA signaling. International Journal of Molecular Sciences, 2020, 21, 5727.
149. Zhang M, Liu Y, Cai H, Guo M, Chai M, She Z, Ye L, Cheng Y, Wang B*, Qin Y*. The bZIP Transcription Factor GmbZIP15 Negatively Regulates Salt- and Drought-Stress Responses in Soybean. International Journal of Molecular Sciences, 2020, 21(20):7778. doi: 10.3390/ijms21207778.
150. He Q, Cai M, Bai M, Zhang M, Chen F, Huang Y, Priyadarshani SVGN, Chai M, Liu L, Chen H, Qin Y*. A Soybean bZIP Transcription Factor GmbZIP19 Confers Multiple Biotic and Abiotic Stress Responses in Plant. International Journal of Molecular Sciences, 2020, 21, 4701
151. Huang Y, Qin Y*. Genome-wide identification and expression analysis of the ERF transcription factor family in pineapple (Ananas comosus (L.) Merr.). Peer J, 2020, 8: e10014.
152. Chai M, Cheng H, Yan M, Priyadarshani SVGN, Zhang M, He Q, Huang Y, Chen F, Liu L, Huang X, Lai L, Chen H, Cai H, Qin Y*. Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.). Peer J, 2020, 8: e9006.
153. Liu Y, Chai M, Zhang M, He Q, Su Z, Priyadarshani SVGN, Liu L, Dong G, Qin Y*. Genome-Wide Analysis, Characterization, and Expression Profile of the Basic Leucine Zipper Transcription Factor Family in Pineapple. International Journal of Genomics, 2020, 3165958.
154. Jin X, Hou Z, Zhao L, Liu L, Priyadarshani SVGN, Wang L, Huang Y, Chen F, Qin Y*. Genome-Wide Identification and Evaluation of New Reference Genes in Pineapple (Ananas comosus L.) during Stamen and Ovule Development. Tropical Plant Biology, 2020, 13, 371-381.
155. Cao S, He S, Lv H, Zhang J, Aslam M, Cheng H, Hu A, Cao G, Zhang X, Yu Y*, Qin Y*. Genome-Wide Analysis of the Cryptochrome Gene Family in Plants. Tropical Plant Biology, 2020, 13: 117-126.
156. Dang X, Chen B, Liu F, Ren H, Liu X, Zhou J, Qin Y, Lin D*. Auxin Signaling-Mediated Apoplastic pH Modification Functions in Petal Conical Cell Shaping. Cell Reports, 2020, 30(11):3904-3916.
157. Zhang L*, Chen F, Zhang X, Li Z, Zhao Y, Lohaus R, Chang X, Dong W, Ho S, Liu X, Song A, Chen J, Guo W, Wang Z, Zhuang Y, Wang H, Chen X, Hu J, Liu Y, Qin Y, Wang K, Dong S, Liu Y, Zhang S, Yu X, Wu Q, Wang L, Yan X, Jiao Y, Kong H, Zhou X, Yu C, Chen Y, Li F, Wang J, Chen W, Chen X, Jia Q, Zhang C, Jiang Y, Zhang W, Liu G, Fu J, Chen F, Ma H, Peer Y, Tang H. The water lily genome and the early evolution of flowering plants. Nature, 2020, 577: 79–84.
158. 周巧, 罗甜甜, 李泽云, 赵合明，秦源，程焱. 碱蓬枝条生根条件的优化.亚热带农业研究. 2020, 16(4)：257-261.
2019
159. Cai H, Zhang M, Chai M, He Q, Huang X, Zhao L, Qin Y*. Epigenetic Regulation of Anthocyanin Biosynthesis by an Antagonistic Interaction between H2A.Z and H3K4me3. New Phytologist, 2019, 221(1):295-308.
160. Cheng Y, Yang P, Zhao L, Priyadarshani SVGN, Zhou Q, Li Z, Li W, Xiong J, Lin Z, Li L, Huang X, Liu J, Aslam M, Zhao H, Li G, Ma J, Li L, Qin Y*. Studies on genome size estimation, chromosome number, gametophyte development and plant morphology of salt-tolerant halophyte Suaeda salsa. BMC Plant Biology, 2019, 19: 473-485.
161. Aslam M*, Fakher B, Anandhan S, Jakada B, Cao S, Qin Y*. SWR1 Chromatin Remodeling Complex: A Key Transcriptional Regulator in Plants. Cells, 2019, 8: 1621.
162. Li Z, Li G, Cai M, Priyadarshani SVGN, Aslam M, Zhou Q, Huang X, Wang X, Liu Y, Qin Y*. Genome-Wide Analysis of the YABBY Transcription Factor Family in Pineapple and Functional Identification of AcYABBY4 Involvement in Salt Stress. International Journal of Molecular Sciences, 2019, 20: 5863.
163. Priyadarshani SVGN, Cai H, Zhou Q, Liu Y, Cheng Y, Xiong J, Patson DL, Cao S, Zhao H, Qin Y*. An Efficient Agrobacterium Mediated Transformation of Pineapple with GFP-Tagged Protein Allows Easy, Non-Destructive Screening of Transgenic Pineapple Plants. Biomolecules, 2019, 9: 617.
164. Aslam M*, Fakher B, Jakada B, Zhao L, Cao S, Cheng Y, Qin Y*. Genome-Wide Identification and Expression Profiling of CBL-CIPK Gene Family in Pineapple (Ananas comosus) and the Role of AcCBL1 in Abiotic and Biotic Stress Response. Biomolecules, 2019, 9: 293.
165. Jakada B, Aslam M*, Fakher B, Greaves J, Li Z, Li W, Lai L, Ayoade O, Cheng Y, Cao S, Li G, Hu J， Qin Y*. Identification of SWI2/SNF2-Related 1 Chromatin Remodeling Complex (SWR1-C) Subunits in Pineapple and the Role of Pineapple SWR1 COMPLEX 6 (AcSWC6) in Biotic and Abiotic Stress Response. Biomolecules, 2019, 9:364.
166. Bai Y, Dai X, Li Y, Wang L, Li W, Liu Y, Cheng Y, Qin Y*.Identification and characterization of pineapple leaf lncRNAs in crassulacean acid metabolism (CAM) photosynthesis pathway. Scientific Reports, 2019, 9:6658-6669.
167. Aslam M, Fakher B, Anandhan S, Pande V, Ahmed Z, Qin Y*. Ectopic Expression of Cold Responsive LlaCIPK Gene Enhances Cold Stress Tolerance in Nicotiana tabacum. Genes, 2019, 10, 446.
168. Cao S, Cheng H, Zhang J, Aslam M, Yan M, Hu A, Lin L, Ojolo S, Zhao H, Priyadarshani S, Yu Y*, Cao G*, Qin Y*. Genome-wide identification, expression pattern analysis and evolution of the Ces/Csl gene superfamily in Pineapple (Ananas comosus). Plants, 2019, 8: 275.
169. He Q, Liu Y, Zhang M, Bai M, Priyadarshani, S V G N, Chai M, Chen F, Huang Y, Liu L, Cai H *, Qin Y*. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Pineapple. Tropical Plant Biology, 2019, 12: 255-267.
170. Cai H, Zhang M, Liu Y, He Q, Chai M, Liu L, Chen F, Huang Y, Yan M, Zhao H, J.-M. Hu, Qin Y*. Genome-wide classification and evolutionary and functional analyses of the VQ family. Tropical Plant Biology, 2019, 12: 117-131.
171. Li Z, Su Z, Qin Y*. Genome-wide identification, Characterization of RDR genes and their expression analysis during reproductive development and stress in Pineapple. Tropical Plant Biology, 2019, 13: 13-22.
172. Chen H, Hu B, Zhao L, Shi D, She Z, Huang X, Priyadarshani S, Niu X*, Qin Y*. (2019) Differential Expression Analysis of Reference Genes in Pineapple (Ananas comosus L.) during Reproductive Development and Response to Abiotic Stress, Hormonal Stimuli. Tropical Plant Biology, 2019, 12: 67-77.
173. Chen LY, VanBuren R, Paris M, Zhou H, Zhang X, Wai CM, Yan H, Chen S, Alonge M, Ramakrishnan S, Liao Z, Liu J, Lin J, Yue J, Fatima M, Lin Z, Zhang J, Huang L, Wang H, Hwa TY, Kao SM, Choi JY, Sharma A, Song J, Wang L, Yim WC, Cushman JC, Paull RE, Matsumoto T, Qin Y, Wu Q, Wang J, Yu Q, Wu J, Zhang S, Boches P, Tung CW, Wang ML, Coppens d'Eeckenbrugge G, Sanewski GM, Purugganan MD, Schatz MC, Bennetzen JL, Lexer C, Ming R*. The bracteatus pineapple genome and domestication of clonally propagated crops. Nature Genetics, 2019, 51(10):1549-1558.
174. Yang Y, Chen B, Dang X, Zhu L, Rao j, Ren H, Lin C, Qin Y, Lin D*. Arabidopsis IPGA1 is a microtubule-associated protein essential for cell expansion during petal morphogenesis. Journal of Experimental Botany, 2019, 70(19): 5231-5243.
2014-2018
175. Zhao L, Cai H, Su Z, Wang L, Huang X, Zhang M, Chen P, Dai X, Zhao H, Palanivelu R, Chen X*, Qin Y*. KLU Suppresses Megasporocyte Cell Fate through SWR1-Mediated Activation of WRKY28 Expression in Arabidopsis. Proceedings of the National Academy of Sciences, 2018, 115(3): 526-535.
176. Priyadarshani S, Hu B, Li W, Ali H, Jia H, Zhao L, Ojolo S, Azam S, Xiong J, Yan M, Rahman Z, Wu Q*, Qin Y*. Simple protoplast isolation system for gene expression and protein interaction studies in pineapple (Ananas comosus L.). Plant Methods, 2018, 14: 95-107.
177. Ojolo S, Cao S, Priyadarshani S, Li W, Yan M, Zhao H, Qin Y*. Plant growth and development regulation: A review from chromatin remodeling perspective. Frontiers in Plant Science, 2018, 9:1232- 1245.
178. Zhang M, Liu Y, Shi H, Guo M, Chai M, He Q, Yan M, Cao D, Zhao L, Cai H*, Qin Y*. Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family. BMC Genomics, 2018, 19:159-173.
179. Li W, Yan M, Hu B, Priyadarshani S, Hou Z, Ojolo S, Xiong J, Zhao H, Qin Y*. Characterization and the Expression Analysis of Nitrate Transporter (NRT) Gene Family in Pineapple. Tropical Plant Biology, 2018, 11: 177-191.
180. Azam S, Liu Y, Rahman Z, Ali H, Qin Y*. Identification, characterization and expression profiles of Dof transcription factors in pineapple (Ananas comosus L). Tropical Plant Biology, 2018, 11: 49-64.
181. Su Z, Zhao L, Zhao Y, Li S, Won S, Cai H, Wang L, Li Z, Chen P, Qin Y*, Chen X*. The THO complex non-cell autonomously represses female germline specification through the TAS3-ARF3 module. Current Biology, 2017, 27(11):1597-1609.
182. Dai X, Bai Y, Zhao L, Dou X, Liu Y, Wang L, Li Y, Li W, Hui Y, Huang X, Wang Z*, Qin Y*. H2A.Z represses gene expression by modulating promoter nucleosome structure and enhancer histone modifications in Arabidopsis. Molecular Plant, 2017, 10: 1274-1292.
183. Cai H, Zhao L, Wang L, Zhang M, Su Z, Cheng Y, Zhao H, Qin Y*. ERECTA signaling controls Arabidopsis inflorescence architecture through chromatin-mediated activation of PRE1 expression. New Phytologist, 2017, 214(4):1579-1596.
184. Chen P, Li Y, Zhao L, Hou Z, Yan M, Hu B, Liu Y, Azam S, Zhang Z, Rahman Z, Liu L, Qin Y*. Genome-wide identification and expression profiling of ATP-binding cassette (ABC) transporter gene family in pineapple (Ananas comosus (L.) Merr.) reveal the role of AcABCG38 in pollen development. Frontiers in Plant Science, 2017, 8: 2150-2164.
185. Ali H, Liu Y, Azam S, Rahman Z, Priyadarshani S, Li W, Huang X, Hu B, Xiong J, Ali U, Qin Y*. Genomic survey, characterization and expression profile analysis of the SBP genes in pineapple (Ananas comosus L.). International Journal of Genomics, 2017: 1032846, doi:10.1155/2017/1032846.
186. Rahman Z, Azam S, Liu Y, Yan C, Ali H, Zhao L,Chen P, Li Y, Priyadarshani S, Qin Y*. Expression profiles of Wuschel-Related Homeobox gene family in pineapple (Ananas comosus L). Tropical Plant Biology, 2017, 10:204-215.
187. Su Z, Wang L, Li W, Zhao L, Huang X, Azam S, Qin Y*. Genome-Wide Identification of Auxin Response Factor (ARF) Genes Family and its Tissue-Specific Prominent Expression in Pineapple (Ananas comosus). Tropical Plant Biology, 2017, 10(2-3):86-96.
188. Hui Li, Nan Luo, Weidong Wang, Zengyu Liu, Jisheng Chen, Liangtao Zhao, Li Tan, Chunyan Wang, Yuan Qin, Chao Li, Tongda Xu, and Zhenbiao Yang*. The REN4 rheostat dynamically coordinates the apical and lateral domains of Arabidopsis pollen tubes. Nature Communications, 2018, 9(1): 2573.
189. Cao L, Wang S, Venglat P, Zhao L, Cheng Y, Ye S, Qin Y, Datla R, Zhou Y*, Wang H*. Arabidopsis ICK/KRP cyclin-dependent kinase inhibitors function to ensure the formation of one megaspore mother cell and one functional megaspore per ovule. PLoS Genetics, 2018, 14(3): e100723.
190. Fei Chen, Yue Hu, Alessandro Vannozzi, Kangcheng Wu, Hanyang Cai, Yuan Qin, Alison Mullis, Zhenguo Lin, Liangsheng Zhang. The WRKY Transcription Factor Family in Model Plants and Crops. Critical Reviews in Plant Sciences, 2018, DOI:10.1080/07352689.2018. 1441103.
191. Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H, Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H, Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A, McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen LY, Shirley N, Lin YR, Liu LY, Hernandez AG, Wright CL, Bulone V, Tuskan GA, Heath K, Zee F, Moore PH, Sunkar R, Leebens-Mack JH, Mockler T, Bennetzen JL, Freeling M, Sankoff D, Paterson AH, Zhu X, Yang X, Smith JA, Cushman JC, Paull RE, Yu Q. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics, 2015, 47(12):1435-42.
192. Leydon, A. R., Tsukamoto, T., Dunatunga, D., Qin, Y., Johnson, M. A., and Palanivelu, R*. Pollen tube discharge completes the process of synergid degeneration that is initiated by pollen tube – synergid interaction in Arabidopsis. Plant Physiology, 2015, 169: 485-496.
193. Yetisen, A.K., Jiang, L., Cooper, J.R., Qin, Y., Palanivelu, R. & and Zohar, Y. A microsystem-based assay for studying pollen tube guidance in plant reproduction. Journal of Micromechanics and Microengineering, 2011, 21: 054018.
194. Yuan Qin and Juan Dong*. Focusing on the focus: what else beyond the master switches for polar cell growth? Molecular Plant, 2015, 8: 582–594.
195. Yuan Qin, Ramin Yadegari, and Ravishankar Palanivelu*. ACTIN-RELATED PROTEIN 6 regulates DISRUPTED MEIOTIC cDNA 1 gene expression in Arabidopsis thaliana ovules. Molecular Reproduction and Development, 2015, 82 (7-8): 499.
196. Qin Y, Zhao L, Skaggs M, Andreuzza S, Tsukamoto T, Panoli A, Wallace K, Smith S, Siddiqi I, Yang Z, Yadegari R* and Palanivelu R*. ACTIN-RELATED PROTEIN6 Regulates Female Meiosis By Modulating Meiotic Gene Expression in Arabidopsis. Plant Cell, 2014, 26:1612-1628.
197. 王路路, 秦源*. 植物雌配子体发育的分子调控. 生命科学, 2017, 29(3):310-318.
198. Zhao L, He J, Cai H, Lin H, Liu R, Yang Z, Qin Y*. Comparative expression profiling reveals novel gene functions in female meiosis and gametophyte development in Arabidopsis. Plant Journal, 2014, 80(4):615-28.
199. 常小艳, 赵丽华, 付凤玲*, 秦源*. 拟南芥温度诱导脂质运载蛋白TIL1参与雌配子体发育. 植物生理学报, 2014, 50 (3): 253~262.
2013及以前
200. Qin Y, Leydon AR, Manziello A, Pandey R, Mount D, Denic S, Vasic B, Johnson MA and Palanivelu R*. Penetration of the stigma and style elicits a novel transcriptome in pollen tubes identifying genes critical for growth in a pistil. PLoS Genetics, 2009, 5 (8): e1000621. doi:10.1371/journal.pgen.1000621.
201. Yuan Qin, Wysocki Jr RJ, Somogyi A, Feinstein Y, Franco JY, Tsukamoto T, Dunatunga D, Levy C, Smith S, Simpson R, Gang D, Johnson MA and Ravishankar Palanivelu*. Sulfinylated Azadecalins act as functional mimics of the pollen germination stimulant in Arabidopsis pistils. Plant Journal, 2011, 68 (5) 800-815.
202. Yuan Qin, Zhenbiao Yang*. Rapid tip growth: Insights from pollen tubes. Seminars in Cell and Developmental Biology, 2011, 22(8):816-24.
203. Yuan Qin and Jie Zhao*. Localization of arabinogalactan-proteins in egg cells, zygotes and two-celled proembryos and effects of β-D-glucosyl Yariv reagent on egg cell fertilization and zygote division in Nicotiana tabacum L. Journal of experimental botany, 2006, 57(9): 2061-74.
204. Yuan Qin and Jie Zhao*. Localization of arabinogalactan-proteins in different stages of embryos and their role in cotyledon formation of Nicotiana tabacum L. Sexual Plant Reproduction, 2007, 20(4): 213-224.
205. Yuan Qin, Dan Chen, Jie Zhao*. Localization of arabinogalactan proteins in anther, pollen, and pollen tube of Nicotiana tabacum L. Protoplasma, 2007, 231(1-2):43-53.
206. Yuan Qin, Jun Yang, Jie Zhao. Calcium changes and the response to methyl jasmonate in rice lodicules during anthesis. Protoplasma, 2005, 225(1-2): 103-112.
207. Tatsuya Tsukamoto, Yuan Qin, Yiding Huang, Damayanthi Dunatunga and Ravishankar Palanivelu. A role for LORELEI, a putative glycosylphosphatidylinositol-anchored protein, in Arabidopsis thaliana double fertilization and early seed development. Plant Journal, 2010, 62(4):571-88.
208. Juanzi Wu, Yuan Qin, Jie Zhao*. Pollen tube growth is affected by exogenous hormones and correlated with hormone changes in styles in Torenia fournieri L. Plant Growth Regulation, 2008, 55(2):137-148.
209. Ying Hu, Yuan Qin, Jie Zhao. Localization of arabinogalactan-proteins epitope and the effects of Yariv phonylglycoside during zygotic embryo development of Arabidopsis thaliana. Protoplasma, 2006, 229(1): 21-31.
210. 秦源，陈丹，赵洁. 烟草柱头和花柱组织中阿拉伯半乳糖蛋白的定位. 植物生理与分子生物学学报，2006, 32(3): 307-14.
211. 秦源，赵洁. 阿拉伯半乳糖蛋白在被子植物有性生殖过程中的作用. 植物生理与分子生物学学报，2004, 30(4): 371-378.
212. 赵振东，秦源，吴娟子，赵洁. 在烟草和蓝猪耳花粉萌发及花粉管生长中阿拉伯半乳糖蛋白的作用. 武汉植物学研究，2006, 24(5): 397-402.
参编书籍：
1. 《植物生理与分子生物学》（第四版）第二篇，第八章 细胞极性; 第十章 植物内膜系统的发育及运输 菅新宇，秦源，杨贞标； 李晖，秦源，杨贞标。高等教育出版社，2012年6月印刷。ISBN 978-7-04-035155-2
2. 中国科学技术协会主编 《2012-2013植物生物学学科发展报告》 综合报告 四、植物生物学科发展趋势及展望 杨贞标 秦源。 中国科学技术出版社， 2014年4月印刷。ISBN 978-7-5046-6549-2/Q.181
3. 《Genetics and Genomics of Pineapple》, Chapter 2, Biology of the Pineapple Plant; Chapter 4, Genetic Diversity of Pineapple, Cheng Yan, Duane Bartholomew, Heming Zhao and Yuan Qin. Springer September, 2018. ISBN 978-3-030-00613-6
4. 中国林业出版社，普通高等院校生物科学类专业系列教材，《细胞生物学实验》，ISBN：9787521930917，主编：张惠莹，邹方东，秦源
5. 高等教育出版社，《植物生理与分子生物学》（第四版），2023，参编
授权专利：
1. Qin Y., Palanivelu R., Wysocki R.Y., Somogyi A., and Feinstein Y. Pollen tube stimulants from Arabidopsis pistils. U.S. patent (美国专利：US2011/0111959 A1) was awarded to the Board of Regents, University of Arizona (on March 5, 2013).
2. 秦源，蔡汉阳，张曼，赵丽华，王路路。快速观察拟南芥胚珠形态及统计外珠被细胞数目的方法。发明专利，专利号ZL201710139085.5,授权公告号CN106950088B，授权公布日 2019.06.04
3. 秦源，周巧，尼罗莎，蔡汉阳，程瀚，魏雪，罗甜甜。菠萝转录因子AcWRKY28在植物抗盐上的应用。发明专利，专利号ZL202110036754.2,授权公告号CN112501185B，授权公布日 2022.12.23
4. 张惠莹，殷炜铧，刘建，秦源，陆瑶，胡育川，董广辉，谢璇。一种促进微藻岩藻黄素积累和脂质合成的培养方法。 发明专利，专利号ZL202210244722.6，授权公告号 CN114561295B，授权公告日 2023.10.31
5. 张惠莹, 殷炜铧, 刘建, 秦源, 陆瑶, 胡育川, 董广辉, 谢璇. 一种促进微藻岩藻黄素积累和脂质合成的培养方法, 授权公告日：2023-10-31, 中国, ZL202210244722.6
6. 程焱，秦源，杨攀，熊俊杰，林志斌。一种大孢子母细胞外围细胞特异性诱导表达系统。发明专利，专利号CN202111071465.2，授权公告号CN114085864B，授权公告日2024.01.19。
7. 程焱，秦源，林志斌，刘金典，熊俊杰，杨攀。一个大孢子母细胞特异诱导表达系统。发明专利，专利号 ZL202111178767.X，授权公告号CN113881696B，授权公告日 2024.10.22
8. 王小媚，蔡昭艳，秦源，潘瑞立，苏伟强，陆宇明，郑平，程焱，白扬，董龙，王路路，胡泊，邱文武，黄丽萍，廖原，施平丽，方位宽，黄章保，任惠，刘业强，黄辉晔。一种百香果三线式架式兜网采收方法。发明专利，专利号 CN202210221604.3，授权公告号CN 114788482 B，授权公告日2024.01.26
9. 王小媚，秦源，邓彪，郑平，王路路，苏伟强，张文斌，程焱，白扬，蔡昭艳，张丹，黄凤，卢翔宇，杜路淼。一种百香果网室母本保存结合露天选种的快速筛选杂交后代的方法。发明专利，专利号 ZL 2022 1 1580786.X，授权公告号CN 116076312 B，授权公告日2024.11.29
10. 秦源，严茂凯，柴梦楠，蔡汉阳.水稻THION22小肽蛋白在打破水稻籼粳亚种生殖隔离中的应用。发明专利，专利号CN202311568053.9，授权公告日2025.8.8
11. 秦源，柴梦楠，严茂凯，蔡汉阳，蒋啸虎. 促进水稻花粉管体外生长的小肽蛋白及其表达方法和应用。发明专利，专利号ZL 2023 1 1568048.8，授权公告日2025.11.14
12. 王小媚，秦源，邓彪，王路路，郑平，柴改凤，刘开创，刘业强，冼通，陶慧，李奔，任惠，苏伟强，刘润泽，黄章保，方位宽. 一种阻断菠萝成熟果实水心病增加的方法。 发明专利，专利号ZL 2024 1 1316928.0，授权公告日2025.09.23
13. 秦源, 柴梦楠, 严茂凯, 蔡汉阳, 郭明亮. 一种水稻THION22基因及其在调控水稻花粉管生长中的应用。发明专利，专利号ZL 2023 1 1568045.4，授权公告日2026.01.30
