一、个人简介
马晓开，男，教授，福建省高层次人才，福建农林大学基因组中心课题组组长。2016年于中科院植物所系统与进化植物学国家重点实验室获博士学位。2011年在瑞士苏黎世大学系统与演化植物学研究所从事访问研究。2016年在日本国立统计数理研究所（ISM）从事生物信息学访问研究。2016-今就职于福建农林大学海峡联合研究院基因组中心，从事植物多组学与繁育系统演化研究。迄今共发表论文36篇（SCI论文30篇），其中以第一/通讯（含并列）作者在Genome Biology，Plant Biotechnology Journal，Plant Communications等刊物发表SCI论文15篇，以合作者在Cell，Nature Genetics等刊物发表SCI论文15篇。申请专利3项（授权2项，转化1项）。合编教育部首批特色优势专业教材1部。主持国家及省部级自然基金等项目9项；参与国家基金等项目10多项。受邀任JoVE期刊<Genomic Tools in Crop Biology>专辑主编，《BMC Genomics》编委，《生物多样性》首届青年编委，Communications Biology，Horticulture Research，Plant Diversity等期刊审稿人。
二、研究方向
1. 植物繁育系统的起源演化和分子机理
2. 植物关键创新性状的适应性演化和分子机理
3. 单细胞、时空组学与群体基因组学
三、代表性成果（论文、专利、品种等）
学术论文（#代表共同第一作者，*代表通讯作者）：
1. Kafkas, S.#, Ma, X.#, Zhang, X., Topçu, H., …, Michelmore, R., Ming, R. * (2023) The Pistachio genomes provide insights into nut tree domestication and ZW sex chromosome evolution. Plant Communications. 4(3). (JCR 1区; 中科院1区; Top期刊)
2. Ma, X. Ju, S., Lin, H …, Ming R., Lan S., Liu, Z.* (2023) Sex-related gene network revealed by transcriptome differentiation of bisexual and unisexual flowers of orchid Cymbidium tortisepalum. International Journal of Molecular Sciences. 24 (23), 16627 (JCR 1区; 中科院2区; Top期刊)
3. Chai, K., Chen, S., Wang, P., Kong, W., Ma, X., & Zhang, X. (2023). Multiomics analysis reveals the genetic basis of volatile terpenoid formation in oolong tea. Journal of Agricultural and Food Chemistry, 71(49), 19888-19899. (JCR 1区; 中科院1区; Top期刊)
4. Ma, X. #, Yu, L. #, Fatima, M. #, Wadlington, W., … Tang, H., Van Deynze, A. & Ming, R.* (2022) The spinach YY genome reveals sex chromosome evolution, domestication and introgression history of the species. Genome Biology (Featured Article) 23(1), 1-30. [highlight in Faculty of 1000 Biology: https://f1000.com/prime/741791436] (JCR 1区; 中科院1区; Top期刊)
5. Ma, X., Fatima, M., Lin, J., …, Ming, R. * (2022) Post pollination sepal longevity of female flower co-regulated by energy-associated multiple pathways in dioecious spinach Frontiers in Plant Science, doi: 1010149. (JCR 1区; 中科院1区; Top期刊)
6. Huang, H., Ji, H., Ju, S., …, & Ma, X.* (2022) Pan-transcriptome combined with phenotypic quantification reveals germplasm kinship and regulation network of bract color variation in Bougainvillea. Frontiers in Plant Science, doi: 10.3389/fpls.2022.1018846. (JCR 1区; 中科院1区; Top期刊)
7. Li, M.#, Liu, K.#, Li, Z.#, Lu, H.#, Ye, Q.#, Zhang, D., …, Ma. X., ..., Tsai W., & Liu, Z. (2022). Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy. Nature Plants, 8(4), 373-388. (JCR 1区; 中科院1区; Top期刊)
8. Wang, J., Li, J., Deng, B., ..., & Ma, X.* (2022) Genome-wide identification and adaptive evolution of CesA/Csl superfamily among species with different life-forms in Orchidaceae. Frontiers in Plant Science, 3504. doi.org/10.3389/fpls.2022.994679. (JCR 1区; 中科院1区; Top期刊)
9. Yue, J.#, VanBuren, R. #, Liu, J. #, Fang, J. #, Zhang, X., ... Ma, X., …, & Ming, R. (2022). SunUp and Sunset genomes revealed impact of particle bombardment mediated transformation and domestication history in papaya. Nature Genetics, 54(5), 715-724. (JCR 1区; 中科院1区; Top期刊)
10. Zhang, L.#, Ma, X.#, Zhang, X.#, Xu, Y.#, Ibrahim, A. K., ... & Zhang, L.* (2021). Reference genomes of the two cultivated jute species. Plant Biotechnology Journal 19(11), 2235-2248. (JCR 1区; 中科院1区; Top期刊)
11. Fatima, M.#, Ma, X.#, Zhou, P., Zaynab, M., Ming, R.* (2021). Auxin regulated mechanisms underlying sepal retention and development after pollination in spinach. BMC Plant Biology, 21(1), 1-15. (JCR 1区; 中科院2区)
12. Lin, J. #, Zhang, W. #, Zhang, X. Ma, X., Zhang S., … & Ming, R.* (2022) Signatures of selection in recently domesticated macadamia. Nature Communications 13(1), 1-12. (JCR 1区; 中科院1区; Top期刊)
13. Lin, W. #, Wu, Y. #, Wang, J. #, Lin, H. #, Xu, X. & Ma, X.* (2020). Network pharmacology study of the hepatoprotective effects of quercetin-containing traditional Chinese medicine, Anoectochilus roxburghii, and validation of quercetin as an anti-liver injury agent in a mouse model of liver injury. Medical Science Monitor. 26: e923533-1. (JCR3区; 中科院4区)
14. Zhang, L. #, Xu, Y. #, Zhang, X. #, Ma, X. #, Zhang, L. #, ... & Qi, J* ; Ming, R.* (2020). The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fiber and leaf shape biogenesis. Plant Biotechnology Journal. 18(8), 1796-1809. (JCR 1区; 中科院1区; Top期刊)
15. Lin, W., Wang, J., Xu, X., Wu, Y., Qiu, D., He, B., ... Ma, X.* & Chen, J.* (2020). Rapid propagation in vitro and accumulation of active substances of endangered Dendrobium cariniferum Rchb. f. Bioengineered, 11(1), 386-396. (JCR 1区; 中科院2区)
16. Sun, W. H., Li, Z., Xiang, S., Ni, L., …, Ma, X., ... & Zou, S. Q.* (2021). The Euscaphis japonica genome and the evolution of malvids. The Plant Journal 108(5), 1382-1399. (JCR 1区; 中科院1区; Top期刊)
17. Zhang, W.#, Lin, J. #, Li, J., Zheng, S., Zhang, X., Chen, S., Ma, X., Dong, F., ... & Ming, R.* (2021). Rambutan genome revealed gene networks for spine formation and aril development. The Plant Journal 108(4), 1037-1052 (JCR 1区; 中科院1区; Top期刊)
18. Yu, L., Ma, X., Wadlington, W., & Ming, R.* (2021). Identification of structural variation and polymorphisms of a sex co-segregating scaffold in spinach. Plant Reproduction 35(1), 19-30. (JCR 1区; 中科院3区)
19. Zhang, X.#, Chen, S.#, Shi, L.#, Gong, D.#, Zhang, S., Zhao, Q., ..., Ma,X., ... & You, M.* (2021). Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis. Nature Genetics 53(8), 1250-1259. (JCR 1区; 中科院1区; Top期刊)
20. Cao, Y. L., Li, Y. L., Fan, Y. F., Li, Z., Yoshida, K., Wang, J. Y., Ma, X. ... & Liu, Z. J.* (2021). Wolfberry genomes and the evolution of Lycium (Solanaceae). Communications biology, 4(1), 1-13. (JCR 1区; 中科院2区; Top期刊)
21. Lin, H.#, Sun, Y.#, & Ma, X*. (2020). The complete plastome of Cymbidium tortisepalum (Orchidaceae) hermaphrodite, Mitochondrial DNA Part B 4(2), 4089-4090. (JCR 4区; 中科院4区)
22. Zhang, X.#, Wang, G.#, Zhang, S., Chen, S., Wang, Y., Wen, P., Ma, X.,... & Ming, R.* (2020). Genomes of the banyan tree and pollinator wasp provide insights into fig-wasp coevolution. Cell. 183(4): 875-889 (JCR 1区; 中科院1区; Top期刊)
23. Yu, L., Ma, X., Deng, B., Yue, J., & Ming, R.* (2020) Construction of high-density genetic maps defined sex determination region of the Y chromosome in spinach. Molecular Genetics and Genomics 296(1), 41-53. (JCR 3区; 中科院3区)
24. Ma, X., Lin, H., Chen, Y., & Ming, R.* (2019). The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum female. Mitochondrial DNA Part B, 4(2), 3876-3877. (JCR 4区; 中科院4区)
25. Sun, Y., Chen, Y., Lin, H., & Ma, X.* (2019). The complete chloroplast genome of a Cymbidium tortisepalum male mutant. Mitochondrial DNA Part B, 4(2), 4087-4088. (JCR 4区; 中科院4区)
26. Meng, Z., Han, J., Lin, Y., Zhao, Y., Lin, Q., Ma, X., ... & Wang, K*. (2019). Characterization of a Saccharum spontaneum with a basic chromosome number of x= 10 provides new insights on genome evolution in genus Saccharum. Theoretical and Applied Genetics, 1-13. (JCR 1区; 中科院1区; Top期刊)
27. Yang, X., Song, J., Todd, J., Peng, Z., Paudel, D., Luo, Z., Ma, X., ... , & Zhao, Y.* (2019). Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a ‘sweet’ crop with ‘bitter’ genomes. Plant Biotechnology Journal, 17(2), 488-498. (JCR 1区; 中科院1区; Top期刊)
28. Zhang, J.#, Zhang, X.#, Tang, H.#, Zhang, Q.#, Hua, X., Ma, X., ... & Ming, R.*. (2018). Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics, 50(11), 1565. (JCR 1区; 中科院1区; Top期刊)
29. Ma, X., Shi, J., Banziger, H., Sun, Y., Guo, Y., …, & Luo, Y*. (2016). The functional significance of complex floral colour pattern in a food-deceptive orchid. Functional Ecology, 30, 721-732. (JCR 1区; 中科院1区; Top期刊)
30. Chen, G., Ma, X., Jürgens, A., Lu, J., Liu, E., Sun, W*. and Cai, X*. (2015). Mimicking livor mortis: a well-known but unsubstantiated color profile in Sapromyiophily. Journal of Chemical Ecology, 41, 808-815. (JCR 3区; 中科院4区)
31. Lin, W., Liu, H., Ma, X., Ying, T., Zhang, Z., Wang, Z. and Luo, Y*. (2014). Can the rare and critically endangered Geodorum eulophioides hybridize naturally with its two sympatric congeners. Orchids, 83(3), 178-183.
32. Wang, Y*., Zhang, Y., Ma, X. and Dong, L. (2008). The unique mouse pollination in an orchid species. Nature Precedings 10101/npre.2008.1824.1.
33. 刘逸, 林瀚, 韩晓文,…,马晓开* (2018) 组学时代下植物-传粉者互作的研究. 福建农林大学学报(自然科学版), 47(06): 641-649
34. 李庆良, 马晓开, 程瑾*, 罗毅波 (2012) 花颜色和花气味的量化研究方法. 生物多样性, 20, 308-316. (权威期刊)
授权专利：
1. 马晓开，何碧珠，林瀚等（2019）一种莲瓣兰单性品种离体再生体系建立及快速繁殖方法 发明专利 ZL.2019103108487（已完成专利转化）
教材编著：
观赏植物种质资源学 (2012) 中国建筑工业出版社
四、承担主要课题
纵向课题
1. 福建农林大学科技创新专项基金，KFb22112XA，被子植物花部信号调控网络的平行演化机理，2022/10-2025/09，6.3万，主持
2．福建省自然科学基金面上项目，2021J01142，表达重塑和补偿在雌雄异株起源和进化中的作用，2021/11-2024/11，10万，主持
3．福建省自然科学基金面上项目，2018J01606，人工驯化对菠菜性染色体进化的作用，2018/04-2021/04，10万，主持
4．国家自然科学基金-青年基金项目，31700199，杓兰亚科繁殖系统转变介导的花部信号趋同演化的机制，2018/01- 2020/12，24万，主持
5．福州市市级科技计划项目，2017-G-88，莲瓣兰的性别决定机理及单性品种选育，2017/03- 2019/02，15万，主持
横向课题
1. 江西省农科院开放课题，KH200195A，油菜近缘种蔊菜群体基因组及花瓣缺失的分子机理，2019/12-2023/12，20万，主持
2. 福建大千集团横向课题，KH200285A，三角梅品种间系谱关系及苞片颜色转录调控机理，2020/10-2023/10，6万，主持
五、教学情况
《基因组学与应用生物学》，《植物生物学》，《生物学基础及应用》实验课
六、招生专业及方向
生物育种（生物信息学、遗传学、分子生物学）
生物技术与工程（生物信息学）
七、联系方式
电子邮箱 equusma@126.com
