张积森，男，汉族，博士，教授，博士生导师，福建农林大学基因组与生物技术研究中心常务副主任。主要从事以甘蔗以及闽台区域特色作物基因组及其生物学性状研究，特别对甘蔗的基因组学及其重要性状的分子生物学进行了有系统的研究。先后主持863子课题、国家自然基金、国家重点研发项目子课题、福建省农技体系建设等研究项目19项；参与国家自然科学基金项目和农业部项目等项目10项。2018年全球首次破译甘蔗基因组，研究成果发布在《Nature Genetics》，并荣登其网站封面。2022年，团队完成的甘蔗的种质资源演化的研究已被《Nature Genetics》接收。张积森教授在Cell，Nature Genetics，PNAS, Genome Research，Genome biology，Current Opinion in Plant Biology，Plant Biotechnology Journal，Plant Cell & Environment，Journal of Experimental Botany等刊物上发表各类文章110篇，其中SCI收录论文72篇，引用次数2100多次。是Nature communication, Communication Biology，Genomics, Proteomics & Bioinformatics, Horticulture research等16个国际主流SCI期刊物应邀审稿人，以及《科学通报》等国内杂刊的应邀审稿人。法国国家研究基金（French National Research Agency (ANR)） 评审专家、中国国家自然基金函评专家、福建省百人计划考核专家。先后获得十四届福建省青年科技奖、中国产学研合作创新成果奖、广东科技进步二等奖。
联系方式:
电子邮箱： zjisen@126.com; zjisen@fafu.edu.cn
主要研究方向：
1. 主要从事甘蔗基因组进化及其优异资源评价与利用、以及分子辅助育种技术等方面的研究；
2. 甘蔗属植物基因组剂量效应及杂种优势与生物量形成关系；
3. 闽台区域特色经济物种的基因组学及其重要生物学性状。
发表文章：（共发表各类论文110多篇，其中第一作者或通迅作者60余篇）
117.Qinchang Chen, Xiaodan Zhang, Yaxue Fang, Baiyu Wang, Shaosi Xu, Kai Zhao, Jisen Zhang* and Jingping Fang*. Genome-wide identification and expression analysis of the R2R3-MYB transcription factor family revealed their potential roles in the flowering process in longan (Dimocarpus longan). Frontiers in Plant Science. (accepted）
116.Qing Zhang#, Yiying Qi#, Haoran Pan#, Haibao Tang#, Gang Wang, Xiuting Hua, Yongjun Wang, Lianyu Lin, Zhen Li, Yihan Li, Fan Yu, Zehuai Yu, Yongji Huang, Tianyou Wang, Panpan Ma, Meijie Dou, Zongyi Sun, Yibin Wang, Hengbo Wang, Xingtan Zhang, Wei Yao, Yuntong Wang, Xinlong Liu, Maojun Wang, Jianping Wang, Zuhu Deng, Jingsheng Xu, Qinghui Yang, ZhongJian Liu, Baoshan Chen, Muqing Zhang, Ray Ming, Jisen Zhang*. Genomic insights into the recent chromosome reduction of complex autopolyploid sugarcane S. spontaneum.2022. Nature Genetics. (accepted) .
115.Jingjing Yue, Robert VanBuren, Juan Liu , Jingping Fang , Xingtan Zhang , Zhenyang Liao , Ching man Wai , Xiuming Xu , Shuai Chen , Shengcheng Zhang , Xiaokai Ma , Yaying Ma , Hongying Yu , Jing Lin , Ping Zhou , Yongji Huang , Ban Deng , Fang Deng , Xiaog Zhao , Hansong Yan , Mahpara Fatima , Dessireé Zerpa , Xiaodan Zhang , ZHICONG LIN , Mei Yang , Nancy Chen , Eric Mora-Newcomer , Patricia Quesada-Rojas , Antonio Bogantes , Victor Jiménez , Haibao Tang, Jisen Zhang, Ming-Li Wang , Robert Paull , Qingyi Yu, Ray Ming. Genomic analyses reveal domestication history and transgenic insertions in papaya. Nature Genetics, (accepted)
114.Guibing Hu#, Junting Feng#, Xu Xiang#, Jiabao Wang#, Jarkko Salojärvi#, Chengming Liu#, Zhenxian Wu#, Jisen Zhang, Xinming Liang, Zide Jiang, Wei Liu, Liangxi Ou, Jiawei Li, Guangyi Fan, Yingxiao Mai, Chengjie Chen, Xintan Zhang, Jiakun Zheng, Hongxiang Peng, Lixian Yao, Ching Man Wai, Xinping Luo , Jiaxin Fu, Haibao Tang, Tianying Lan, Biao Lai, Jinhua Sun, Yongzan Wei, Huanling Li, Jiezhen Chen, Xuming Huang, Qian Yan, Xin Liu, Leah K. McHale, William Rolling, Romain Guyot, David Sankoff, Chunfang Zheng,Victor A. Albert*, Ray Ming*, Houbin Chen*, Rui Xia*, Jianguo Li*. Two divergent haplotypes from a highly heterozygous lychee genome point to independent domestication events for early and late-maturing cultivars. 2022.Nature Genetics, https://doi.org/10.1038/s41588-021-00971-3
113.Baiyu Wang, Wenshun Hu, Yaxue Fang, Xiaoxi Feng, Jingping Fang, Tengyue Zou, Shaoquan Zheng, Ray Ming, Jisen Zhang*. Comparative analysis of the MADS-box genes revealed their potential functions for flower and fruit development in longan (Dimocarpus longan). 2022.Frontiers in Plant Science. doi: 10.3389/fpls.2021.813798
112.Gang Wang; Yuanyuan Wang; Lianfu Chen; Hongbo Wang; Lin Guo; Xuan Zhou; Meijie Dou; Baiyu Wang; Jingxian Lin; Lei Liu; Zhengchao Wang; Youjin Deng*; Jisen Zhang*. Genetic structure and evolutionary diversity of mating-type (MAT) loci in Hypsizygus marmoreus. IMA Fungus. (2021) 12:35. DOI:10.1186/s43008-021-00086-8.
111.Tianyou Wang, Jingping Fang and Jisen Zhang*. Advances in Sugarcane Genomics and Genetics. Sugar Tech. 1-15 DOI：10.1007/s12355-021-01065-4.
110. Xiaowei Ma†, Xiang Luo†, Yongzan Wei, Tuanhui Bai, Jiangli Shi, Bing Zheng, Wentian Xu, Li Li, Songbiao Wang*, Jisen Zhang* and Hongxia Wu*. Chromosome-scale genome and comparative transcriptomic analysis reveal transcriptional regulators of β-carotene biosynthesis in Mango. Frontiers in Plant Science. 12:749108. doi: 10.3389/fpls.2021.749108.
109.Yuan Yuan, Xiping Yang, Mengfan Feng, Hongyan Ding, Muhammad Tahir Khan, Jisen Zhang and Muqing Zhang. Genome-wide analysis of R2R3-MYB transcription factors family in the autopolyploid Saccharum spontaneum: an exploration of dominance expression and stress response. BMC Genomics 22, 622 (2021). https://doi.org/10.1186/s12864-021-07689-w
108.Wenshun Hu, Baiyu Wang, Muhammad Moaaz Ali, Xiuping Chen, Jisen Zhang, Shaoquan Zheng, Faxing Chen. Free Amino Acids Profile and Expression Analysis of Core Genes Involved in Branched-Chain Amino Acids Metabolism During Fruit Development of Longan (Dimocarpus longan Lour.) Cultivars with Different Aroma Types. MDPI Biology. 2021, 10, x. doi.org/10.3390.
107.Xiaomin Feng, Yongjun Wang, Nannan Zhang, Shuai Gao, Jiayun Wu, Rui Liu, Yonghong Huang, Jisen Zhang and Yongwen Qi*. Comparative phylogenetic analysis of CBL reveals the gene family evolution and functional divergence in Saccharum spontaneum. BMC Plant Biology. (2021) 21:395. doi.org/10.1186/s12870-021-03175-3.
106.Zhang, Wenping; Lin, Jishan; Li, Jian-Guo; Zheng, Shaoquan; Zhang, Xingtan; Chen, Shuai; Ma, Xiaokai; Dong, Fei; Jia, Haifeng; Xu, Xiuming; Yang, Ziqin; Ma, Panpan; Deng, Fang; Deng, Ban; Huang, Yongji; Li, Zhanjie; Lv, Xiaozhou; Ma, Yaying; Liao, Zhenyang; Lin, Zhicong; Lin, Jing; Zhang, Shengcheng; Matsumoto, Tracie; Xia, Rui; Zhang, Jisen, Ming, Ray*. Rambutan genome revealed gene networks for spine formation and aril development. The Plant Journal. 2021 Sep 13. doi: 10.1111/tpj.15491. Epub ahead of print. PMID: 34519122.
105.Shijing Feng†, Zhenshan Liu†, Jian Cheng†, Zihe Li†, Lu Tian†, Min Liu, Tuxi Yang, Yulin Liu, Yonghong Liu, He Dai, Zujun Yang, Qing Zhang, Gang Wang, Jisen Zhang*, Huifeng Jiang* and Anzhi Wei*. Zanthoxylum-specific whole genome duplication and recent activity of transposable elements in the highly repetitive paleotetraploid Z. bungeanum genome. Horticulture Research. (2021). https://doi.org/10.1038/s41438-021-00665-1.
104.Zhen Li, Gang Wang, Xihui Liu, Zhengchao Wang, Muqing Zhang*, Jisen Zhang*. Genome-wide identification and expression profiling of DREB Genes in Saccharum spontaneum. BMC Genomics. 22, 456 (2021). https://doi.org/10.1186/s12864-021-07799-5
103.Xiaomin Feng, Yongjun Wang, Nannan Zhang, Xiangbo Zhang, Jiayun Wu, Yonghong Huang, Miaohong Ruan, Jisen Zhang, Yongwen Qi*. Systematic Identification, Evolution and Expression Analysis of the SPL Gene Family in Sugarcane (Saccharum spontaneum). Tropical Plant Biology.doi.org/10.1007/s12042-021-09293-4.
102.Zilin Wu, Xiaoning Gao, Nannan Zhang, Xiaomin Feng, Yonghong Huang, Qiaoying Zeng, Jiayun Wu, Jisen Zhang and Yongwen Qi*. Genome-wide identification and transcriptional analysis of ammonium transporters in Saccharum. Genomics, 2021,113: 4, 1671-1680.doi.org/10.1016/j.ygeno.2021.04.001.
101.Gang Wang, Lianfu Chen, Weiqi Tang, Yuanyuan Wang, Qing Zhang, Hongbo Wang, Xuan Zhou, Haofeng Wu, Lin Guo, Meijie Dou, Lei Liu, Baiyu Wang, Jingxian Lin, Baogui Xie, Zhengchao Wang, Zhong-Jian Liu, Ray Ming, Jisen Zhang* A Melanogenesis-related Candidate Gene Identified by a high Quality Genome Assembly and Population Diversity Analysis in Hypsizygus Marmoreus. Journal of Genetics and Genomics. 2021. doi.org/10.1016/j.jgg.2021.01.002 .
100. Wang, Yi†; Xin, Haiping†; Fan, Peige†; Zhang, Jisen†; Liu, Yongbo; Dong, Yang; Wang, Zemin; Yang, Yingzhen; Zhang, Qing; Ray, Ming; Zhong, Gan-Yuan; Li, Shaohua*; Liang, Zhenchang*. The genome of Shanputao (Vitis amurensis) provides a new insight into cold tolerance of grapevine. The Plant Journal. 2021. https://doi.org/10.1111/tpj.15127
99. Qing Zhang#, Xiuting Hua#, Hong Liu#, Yuan Yuan, Yan Shi, Zhengchao Wang, Muqing Zhang, Ray Ming, Jisen Zhang*.(2020). Evolutionary Expansion and Functional Divergence of Sugar Transporters in Saccharum (S. spontaneum and S. officinarum). The Plant Journal . doi.org/10.1111/tpj.15076
98. Duo Chen#, Qing Zhang#, Weiqi Tang#, Zhen Huang#, Gang Wang#, Yongjun Wang, Jiaxian Shi, Huimin Xu, Lianyu Lin, Zhen Li, Wenchao Chi, Likun Huang, Jing Xia, Xingtan Zhang, Lin Guo, Yuanyuan Wang, Panpan Ma, Juan Tang, Gang Zhou, Min Liu, Fuyan Liu, Xiuting Hua, Baiyu Wang, Qiaochu Shen, Qing Jiang, Jingxian Lin, Xuequn Chen, Hongbo Wang, Meijie Dou, Lei Liu, Haoran Pan, Yiying Qi, Bin Wu, Jingping Fang, Yitao Zhou, Wan Cen, Wenjin He, Qiujin Zhang, Ting Xue, Gang Lin, Wenchun Zhang, Zhongjian Liu, Liming Qu, Aiming Wang, Qichang Ye, Jianming Chen, Yanding Zhang, Ray Ming, Marc Van Montagu*, Haibao Tang*, Yves Van de Peer*, Youqiang Chen*, and Jisen Zhang*. (2020).The evolutionary origin and domestication history of goldfish (Carassius auratus). Proceedings of the National Academy of Sciences USA. 10.1073/pnas.2005545117.
97. Xingtan Zhang; Gang Wang; Shengcheng Zhang; Shuai Chen; Yibin Wang; Ping Wen; Xiaokai Ma; Yan Shi; Rui Qi; Yang Yang; Zhenyang Liao; Jing Lin; Jishan Lin; Xiuming Xu; Xuequn Chen; Xindan Xu; Fang Deng; Lihua Zhao; Yi-lun Lee; Rong Wang; Xiao-Yong Chen; Yann-Rong Lin; Jisen Zhang; Haibao Tang; Jin Chen*; Ray Ming*.(2020). Genomes of banyan fig and pollinator wasp provide insights into fig-wasp coevolution. Cell. doi.org/10.1016/j.cell.2020.09.043
96. Panpan Ma#; Xingtan Zhang#; Lanping Chen; Qian Zhao; Qing Zhang; Xiuting Hua; Zhencao Wang; Haibao Tang; Qingyi Yu; Muqing Zhang; Ray Ming; Jisen Zhang*.(2020). Comparative analysis of sucrose phosphate synthase (SPS) gene family between Saccharum officinarum and Saccharum spontaneum. BMC Plant Biology. 20:422. doi.org/10.1186/s12870-020-02599-7.
95. Jingping Fang*, Aiting Lin, Xue Yuan, Youqiang Chen, Wenjin He, Jinlong Huang, Xingtan Zhang, Gang Lin, Kai Zhao, Jisen Zhang, Ting Xue*. (2020). The complete chloroplast genome of Isochrysis galbana and comparison with related haptophyte species. Algal Research. doi: 10.1016/j.algal.2020.101989
94. Naiyan Xiao#, Hengbo Wang#*, Wei Yao, Muqing Zhang, Ray Ming, Jisen Zhang*.(2020). Development and evaluation of SSR markers based on large scale full-length transcriptome sequencing in Sugarcane. Tropical Plant Biology. DOI: 10.1007/s12042-020-09260-5).
93. Zhang Liwu*, Xu Yi, Zhang Xingtan, Ma Xiaokai, Zhang Lilan, Liao Zhenyang, Zhang Qing, Wan Xuebei, Cheng Yan, Zhang Jisen, Li Dongxu, Zhang Liemei, Xu Jiantang, Tao Aifen, Lin Lihui, Fang Pingping, Chen Shuai, Qi Rui, Xu Xiuming, Qi Jianmin, Ming Ray*. (2020). The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fiber and leaf shape biogenesis. Plant Biotechnology Journal. 10.1111/pbi.13341.
92. Xiaomin Feng, Yongjun Wang, Nannan Zhang, Qiaoying Zeng, Jiayun Wu, Xiaobin Wu, Lei Wang, Jisen Zhang, Yongwen Qi*.(2020).Genome-wide identification, evolution and expression analysis of HAK/KUP/KT gene family in Saccharum. BMC Plant Biology. 20:20 doi.org/10.1186/s12870-019-2227-7
91. Zhang Liwu*, Xu Yi, Zhang Xingtan, Ma Xiaokai, Zhang Lilan, Liao Zhenyang, Zhang Qing, Wan Xuebei, Cheng Yan, Zhang Jisen, Li Dongxu, Zhang Liemei, Xu Jiantang, Tao Aifen, Lin Lihui, Fang Pingping, Chen Shuai, Qi Rui, Xu Xiuming, Qi Jianmin, Ming Ray*. (2020). The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fiber and leaf shape biogenesis. Plant Biotechnology Journal. 10.1111/pbi.13341.
90. Zhen Li, Xiuting Hua, Weiming Zhong, Yuan Yuan, Yongjun Wang, Zhengchao Wang, Ray Ming, Jisen Zhang*. (2019). Genome-Wide Identification and Expression Profile Analysis of WRKY Family Genes in the Autopolyploid Saccharum spontaneum. Plant Cell Physiology 10.1093/pcp/pcz227.
89.Cheng, Guangyuan; Yang, Zongtao; Zhang, Hai; Zhang, Jisen; Xu, Jingsheng*.(2019).Remorin Interacting with PCaP1 Impairs ‘Turnip Mosaic Virus’ Intercellular Movement but Is Antagonized by VPg. New Phytologist. 10.1111/nph.16285
88. Gang Wang, Jingxian Lin, Yang Shi, Xiaoguang Chang, Yuanyuan Wang, Lin Guo, Wenhui Wang, Meijie Dou, Youjin Deng, Ray Ming, Jisen Zhang*. (2019). Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya. BMC genomics.20:765. DOI:10.1186/s12864-019-6133-z.
87. Souza, GM*; Van Sluys, MA*; Lembke, CG; Lee, H; Margarido, GRA; Hotta, CT; Gaiarsa, JW; Diniz, AL; Oliveira, MM; Ferreira, SS; Nishiyama-Jr, MY; ten-Caten, F; Ragagnin, GT; Andrade, PM; Souza, RF; Nicastro, GG; Pandya, R; Kim, C; Durham, AM; Carneiro, MS; Zhang, J; Zhang, X; Zhang, Q; Ming, R; Schatz, MC; Davidson, B; Paterson, A; Heckerman, D. (2019) .Assembly of the 373K gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world’s leading biomass crop. GigaScience.doi: 10.1093/gigascience/giz129.
86. Chen, L.Y., R. VanBuren, M. Paris, H. Zhou, X. Ching Man Wai, H. Yan, S. Chen, M. Alonge, S. Ramakrishnan, Z. Liao, J. Liu, J. Lin, J. Yue, M. Fatima, Z. Lin, J. Zhang, L. Huang, H. Wang, T.-Y. Hwa, S.-M. Kao, J.Y. Choi, A. Sharma, J. Song, L. Wang, W.C. Yim, J.C. Cushman, R.E. Paull, T. Matsumoto, Y. Qin, Q. Wu, J. Wang, Q. Yu, J. Wu, S. Zhang, P. Boches, C.-W. Tung, M.-L. Wang, G. Coppens d’Eeckenbrugge, G.M. Sanewski, M.D. Purugganan, Michael Schatz, J.L. Bennetzen*, C. Lexer*, R. Ming*. (2019). The bracteatus pineapple genome and domestication of clonally propagated crops. Nature Genetics. doi.org/10.1038/s41588-019-0506-8.
85. Panpan Ma, Yuan Yuan, Qiaochu Shen, Qing Jiang, Xiuting Hua, Qing Zhang, Muqing Zhang, Ray Ming, Jisen Zhang*.(2019).Evolution and Expression Analysis of Starch Synthase Gene Families in Saccharum spontaneum. Tropical Plant Biology.DOI: 10.1007/s12042-019-09225-3
84. Yan Shi, Huimin Xu, Qiaochu Shen, Jingxian Lin, Yongjun Wang, Xiuting Hua, Wei Yao, Qingyi Yu, Ray Ming, Jisen Zhang*.(2019) .Comparative analysis of SUS gene family between Saccharum officinarum and Saccharum spontaneum. Tropical Plant Biology. DOI: 10.1007/s12042-019-09230-6.
83. Yongjun Wang, Xiuting Hua, Jingsheng Xu, Zhichang Chen, Tianqu Fan, Zhaohui Zeng, Hengbo Wang, Ai-Ling Hour, Qingyi Yu, Ray Ming, Jisen Zhang*.(2019). Comparative Genomics revealed the Gene Evolution and Functional Divergence of Magnesium Transporter Families in Saccharum. BMC Genomics.DOI: 10.1186/s12864-019-5437-3.
82. Weichang Hu#; Xiuting Hua#; Qing Zhang; Jianping Wang; Qiaochu Shen; Xingtan Zhang; Kai Wang; Qingyi Yu; Yann-Rong Lin; Ray Ming; Jisen Zhang*.(2018). New Insights into the Evolution and Functional Divergence of the SWEET family in Saccharum Based on Comparative Genomics. BMC Plant Biology. DOI: 10.1186/s12870-018-1495-y
81. Xiaoming Sun, Zhenfei Zhu, Langlang Zhang, Linchuan Fang,Jisen Zhang, Qingfeng Wang, Shaohua Li, Zhenchang Liang, Haiping Xin*. (2018). Overexpression of ethylene response factors VaERF080 and VaERF087 from Vitis amurensis enhances cold tolerance in Arabidopsis. Scientia Horticulturae.https://doi.org/10.1016/j.scienta.2018.08.055.
80. Anupma Sharma, Jinjin Song, Qingfan Lin, Ratnesh Singh, Ninfa Ramos, Kai Wang, Jisen Zhang, Ray Ming, Qingyi Yu*. (2018).Comparative analysis of homologous sequences of Saccharum officinarum and Saccharum spontaneum reveals independent polyploidization events. Frontier in plant science. DOI: 10.3389/fpls.2018.01414.
79. Huimin Xu, Qingyi Yu, Yan Shi, Xiuting Hua, Haibao Tang, Long Yang*, Ray Ming*, and Jisen Zhang*.(2018). PGD: Pineapple Genomics Database. Horticulture Research.5:66 :DOI: 10.1038/s41438-018-0078-2
78. Jisen Zhang*#, Xingtan Zhang#, Haibao Tang#, Qing Zhang#, Xiuting Hua, Xiaokai Ma,....,Chifumi Nagai*,Ray Ming*. (2018) .Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.. Nature Genetics,DOI: 10.1038/s41588-018-0237-2.50 : 1565–1573
77. Xiping Yang, Jian Song, James Todd, Ze Peng, Dev Paudel,Ziliang Luo, Xiaokai Ma, Qian You, Erik Hanson, Zifan Zhao,Yang Zhao, Jisen Zhang, Ray Ming, Jianping Wang*.(2018) .Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a “sweet” crop with “bitter” genomes. Plant Biotechnology Journal.https://doi.org/10.1111/pbi.12992.
76. Zhang Jisen, Zhang Qing, Li Leiting, Tang Haibao, Zhang Qiong, Chen Yang, Arro Jie, Zhang Xingtan, Wang Aiqin, Miao Chenyong, Ming Ray*.(2018) .Recent Polyploidization Events in Three Saccharum Founding Species.Plant Biotechnology Journal.doi.org/10.1111/pbi.12962
75. Fan Zhu, Ching Man Wai, Jisen Zhang, Tyler C. Jones, Chifumi Nagai, Ray Ming*. (2018). Differential expression of hormone related genes between extreme segregants of a Saccharum interspecific F2 population. Euphytica 214(3).DOI:10.1007/s10681-018-2137-z.
74. Guangrui Dong, Jiao Shen, Qing Zhang, Jianping Wang, Qingyi Yu, Ray Ming, Kai Wang and Jisen Zhang*.(2018) Development and applications of chromosome-specific cytogenetic BAC-FISH probes in S. spontaneum.Frontiers in Plant Science. doi: 10.3389/fpls.2018.00218
73. Huiling Liu, Xiping Yang, Qian You, Jian Song, Liping Wang, Jisen Zhang, Zuhu Deng，Ray Ming，Jianping Wang*. (2018). Pedigree, marker recruitment, and genetic diversity of modern sugarcane cultivars in China and the United States.Euphytica.214:48 https://doi.org/10.1007/s10681-018-2127-1.
72. Ching Man Wai, Jisen Zhang, Tyler C. Jones, Chifumi Nagai and Ray Ming*. (2017). Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population. BMC Genomics. 18:773. doi.org/10.1186/s12864-017-4158-8.
71. Jiandong Bao, Meilian Chen, Zhenhui Zhong, Wei Tang, Lianyu Lin, Xingtan Zhang, Haolang Jiang, Deyu Zhang, Chenyong Miao, Haibao Tang, Jisen Zhang, Guodong Lu, Ray Ming, Justice Norvienyeku, Baohua Wang, Zonghua Wang. (2017).PacBio Sequencing Reveals Transposable Element as a Key Contributor to Genomic Plasticity and Virulence Variation in Magnaporthe oryzae. Molecular plant. DOI: doi.org/10.1016/j.molp.2017.08.008.
70. Xiping Yang, Jian Song, Qian You, Dev R. Paudel, Jisen Zhang and Jianping Wang*. (2017).Mining sequence variations in representative polyploid sugarcane germplasm accessions. BMC Genomics.18:594.DOI: 10.1186/s12864-017-3980-3.
69. Ching Man Wai, Robert VanBuren, Jisen Zhang, Lixian Huang, Wenjing Miao, Patrick Edger, Won Yim, Henry Priest, Blake Meyers, Todd C. Mockler, J. Andrew C. Smith, John Cushman, Ray Ming*. (2017).Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple.The Plant Journal. DOI: 10.1111/tpj.13630.
68. Aijuan Xue, Zhen Li, Muchen Cai, Qing Zhang, Xingtan Zhang, Ray Ming, Jisen Zhang*.(2017).Identification and Characterization of microRNAs from Saccharum officinarum by deep sequencing. Tropical Plant Biology. DOI: 10.1007/s12042-017-9190-y.
67. Qing Zhang, Muchen Cai, Xiaomin Yu, Lishan Wang, Chunfang Guo, Ray Ming, and Jisen Zhang* .(2017). Transcriptome dynamics of Camellia sinensis in response to continuous salinity and drought stress. Tree Genetics & Genomes. 13:78. DOI: 10.1007/s11295-017-1161-9.
66. Liming Wang, Yuexia Zheng, Shihui Ding; Qing Zhang, Youqiang Chen, Jisen Zhang* .(2017). Molecular cloning, structure, phylogeny and expression analysis of the invertase gene family in sugarcane. BMC Plant Biology. DOI:10.1186/s12870-017-1052-0.
65. Yihong Chen, Qing Zhang, Weichang Hu,Xingtan Zhang, Liming Wang, Xiuting Hua, Qingyi Yu, Ray Ming, Jisen Zhang* .(2017). Evolution and expression of the fructokinase gene family in Saccharum. BMC Genomics. DOI: 10.1186/s12864-017-3535-7.
64. Han Jinlei, Masonbrink Rick, Shan Wenbo, Song Fengqin, Zhang Jisen, Yu, Weichang, Wang, Kunbo, Wu, Yufeng, Tang Haibao, Wendel Jonathan, Wang Kai* .(2016). Rapid proliferation and nucleolar organizer targeting centromeric retrotransposons in cotton. The Plant Journal. doi: 10.1111/tpj.13309.
63. VanBuren R., C. M. Wai, J. Zhang, J. Han, J. Arro, Z. Lin, Z. Liao, Q. Yu, M.-L. Wang, F. Zee, R. C. Moore, D. Charlesworth, R. Ming* .(2016). Extremely low nucleotide diversity in the X-linked region of papaya caused by a strong selective sweep. Genome Biology. doi: 10.1186/s13059-016-1095-9.
62. Jisen Zhang, Anupma Sharma, Qingyi Yu, Jianping Wang, Leiting Li, Lin Zhu, Xingtan Zhang, Youqiang Chen, Ray Ming*.(2016). Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum. BMC Genomics. doi: 10.1186/s12864-016-2817-9.
61. Jian Song, Xiping Yang, Marcio F. R. Resende Jr., Leandro Gomide Neves, James Todd, Jisen Zhang, Jack Comstock, Jianping Wang* .(2016). Natural allelic variations in highly polyploid Saccharum complex. Frontiers in Plant Science. doi: 10.3389/fpls.2016.00804.
60. Qing Zhang，Weichang Hu, Fan Zhu, Liming Wang, Qingyi Yu, Ray Ming, Jisen Zhang*.(2016).Structure, Phylogeny, Allelic Haplotypes and Expression of Sucrose Transporter Gene Families in Saccharum. BMC Genomics. 17:88. DOI: 10.1186/s12864-016-2419-6
59. Liwu Zhang,Ray Ming, Jisen Zhang, Aifen Tao, Pingping Fangand Jianmin Qi. (2015).De novo transcriptome sequence and identification of major bast-related genes involved in cellulose biosynthesis in jute (Corchorus capsularis L.). BMC Genomics. 15;16(1):1062. doi: 10.1186/s12864-015-2256-z.
58. Ming Ray*...Jisen Zhang...et al. (2015) .The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics . doi:10.1038/ng.3435)
57. Robert VanBuren#, Fanchang Zeng#, Cuixia Chen#, Jisen Zhang#, Ching Man Wai, Jennifer Han, Rishi Aryal, Andrea R. Gschwend, Jianping Wang, Jong-Kuk Na, Lixian Huang, Lingmao Zhang, Wenjing Miao, Jiqing Gou, Jie Arro, Romain Guyot, Richard C. Moore, Ming-Li Wang, Francis Zee, Deborah Charlesworth, Paul H. Moore, Qingyi Yu, Ray Ming .(2015). Origin and domestication of papaya Yh chromosome. Genome Research, 25:524–533. doi: 10.1101/gr.183905.114.
56. Tang H, X Zhang, C Miao, J Zhang, R Ming, JC Schnable, PS Schnable, E Lyons, J Lu .(2015).Robust scaffold ordering based on multiple maps. Genome Biology.16(1):3. doi:10.1186/s13059-014-0573-1.
55. Jisen Zhang, Juan Liu, Ray Ming*. (2014). Genomic analysis of CAM plant pineapple. Journal of Experimental Botany. 65 (13):3395-3404. doi:10.1093/jxb/eru101
54. Jisen Zhang, Boualem A., Bendahmane A., Ray. Ming*. (2014). Genomics of sex determination. Current Opinion in Plant Biology. 18:110–116.
53. Jisen Zhang, Jie Arro, Youqiang Chen, Ray Ming*.( 2013). Haplotype analysis of sucrose synthase gene family in three Saccharum species. BMC Genomics. 14:314.
52. Jisen Zhang, Chifumi Nagai, Qingyi Yu, Yongbao. Pan, Tomas Ayala-Silva, Raymond Schnell, Jack Comstock, Aru Arumuganathan , Ray Ming* .( 2012). Genome size variation in three Saccharum species. Euphytica. 185:511–519.
51. Jisen Zhang, Z. Zhang, Y. Wu, L. Chen, Q. Luo, J. Chen, X. Huang, Y. Cheng, Z. Wang .(2012). Regulatory Effect of Hypoxia-Inducible Factor-1α on hCG-Stimulated Endothelin-2 Expression in Granulosa Cells from the PMSG-Treated Rat Ovary, Journal of Reproduction and Development. 678-684.
50. Jingdong Sun#, Jisen Zhang#, Clayton Larue, Steven Huber*. (2011). Decrease in leaf sucrose synthesis leads to increased leaf starch turnover and decreased RuBP regeneration-limited photosynthesis but not Rubisco-limited photosynthesis in Arabidopsis null mutants of SPSA1. Plant, Cell & Environment. 34, 592–604.
49. Lin Zhu, Jisen Zhang, Youqiang Chen, Hongyu Pan, Ray Ming*.(2013). Identification and genes expression analysis of ATP-dependent phosphofructokinase family members among three Saccharum species. Function Plant Biology, 2013,40(4):369-378.
48. Haiping Xin, Jisen Zhang,Wei Zhu, Nian Wang, Peige Fang, Yuepeng Han, Ray Ming, Shaohua Li*.(2013) The effects of artificial selection on sugar metabolism and transporter genes in grape. Tree Genetics & Genomics. DOI 10.1007/s11295-013-0643-7
47. Zhengchao Wang, Zhenghong Zhang, Yanqing Wu, Liyun Chen, Qianping Luo, Jisen Zhang, Jiajie Chen, Zimiao Luo, Xiaohong Huang, Yong Chen.( 2012).Effects of Echinomycin on Endothelin-2 Expression and Ovulation in Immature Rats Primed with Gonadotropins. Experimental and Molecular Medicine, 2012, 31;44(10):615-21. doi: 10.3858/emm.2012.44.10.070.
46. Ming, R., R. VanBuren, Y. Liu, M. Yang, Y. Han, L.-T. Li, Q. Zhang, M.-J. Kim, M.C. Schatz, M. Campbell, J. Li, J.E. Bowers, H. Tang, E. Lyons, A.A. Ferguson, G. Narzisi, D.R. Nelson, C.E. Blaby-Haas, A.R. Gschwend, Y. Jiao, J.P. Der, F. Zeng, J. Han, X. Min, K.A. Hudson, R. Singh, A.K.Grennan, S.J. Karpowicz, J.R. Watling, K. Ito, S.A. Robinson, M.E. Hudson, Q. Yu, T.C. Mockler, A. Carroll, Y. Zheng, R. Sunkar, R. Jia, N. Chen, J. Arro, C.M. Wai, A. Spence, Y. Han, L. Xu, J. Zhang, R. Peery, M.J. Haus, W. Xiong., J.A. Walsh, J. Wu, M.-L. Wang, Y.J. Zhu, R.E. Paull, A.B. Britt, C. Du, S.R. Downie, M.A. Schuler, T.P. Michael, S.P. Long, D.R. Ort, J.W. Schopf, D.R. Gang, N. Jiang, M. Yandell, C.W. dePamphilis, S.S. Merchant, A.H. Paterson, B.B. Buchanan, S. Li, J. Shen-Miller.( 2013). Genome of the long-living Sacred lotus (Nelumbo nucifera Gaertn.) Genome Biology 14: R41.
45. Youxiong Que, Jianwei Lin, Jisen Zhang, Miaohong Ruan, Liping Xu, Muqing Zhang*.
Molecular cloning and characterization of a non-TIR-NBS-LRR disease resistance gene analogue from sugarcane. Sugar Tech (2008) 10: 71. doi:10.1007/s12355-008-0012-2.
44. 郑少泉，曾黎辉，张积森，林河通，邓朝军，庄伊美.新中国龙眼科学研究70 年.果树学报2019，36（10）：1-??: DOI:10.13925/j.cnki.gsxb. Z15
43. 董广蕊，石佳仙，侯藹玲，张积森*.甘蔗基因组研究进展。生物技术。2018:28(3):296-301.
42. 李珍，华秀婷，张积森*.高等植物WRKY转录因子家族的演化及功能研究综述.热带作物学报,2018,39(2):405-414 (*通讯作者).
41. 沈姣,王凯,张文盼,董广蕊,石岩,张积森*.甘蔗染色体研究近况.热带作物学报,2016,37(7):1430-1436. ( *通讯作者）
40. 张清,胡伟长,张积森.*植物蔗糖转运蛋白研究进展.热带作物学报.2016,37(01): 1-11.( *通讯作者）
39. 陈毅鸿,张积森*.植物果糖激酶基因家族演化及其功能.分子植物育种.2016, 14,(2), 359-369( *通讯作者）
38. 池福铃，王丽珊，陈兰平，张清，陈由强，张积森*.甘蔗纤维素合成酶家族的基因组演化.北京：中国科技论文在线. [2015-01-29].http://www.paper.edu.cn/releasepaper/content/ 201501-504. ( *通讯作者）
37. 王丽珊，林清凡，陈兰平，池福铃，郭春芳，张积森.茶树P5CS基因克隆及其在渗透和高盐胁迫下的表达分析.热带作物学报.2015,36(1): 68-75
36. 陈兰平，陈由强，方静平，宋喜梅，叶冰莹，陈如凯，张积森*.甘蔗SPS 基因家族成员表达与糖分积累关系解析，热带作物学报.2014，35（7）： 1354-1361.( *通讯作者）
35. 张积森;郑月霞;邹丽娟;叶冰莹;陈如凯;陈由强.酵母单杂交方法步鉴定甘蔗SPSⅢ启动子调控序列.农业生物技术学报. 2012, 20(11): 1282~1290
34. 张积森，郑月霞，方静平，高玉娜，郭春芳，叶冰莹，陈由强，陈如凯.甘蔗SPSIII基因启动子5侧翼的GUS表达载体构建.福建教育学院学报.2012(3): 118-121.
33. 张积森，林清凡，方静平，邹丽娟，叶冰莹，陈由强，陈如凯.甘蔗SPS III启动子区ATCT-motif和CAT-box元件的酵母单杂交报告载体构建.福建师范大学学报（自然科学版）. 2013, 29(1).
32. 许玉林，郑月霞，叶冰莹，张积森，陈由强.一株纤维素降解真菌的筛选及鉴定. 微生物学通报.2013, 40(2): 220-227.
31. 郑月霞，许玉林，张积森，叶冰莹，陈由强，陈如凯.甘蔗可溶性酸性转化酶基因的克隆及序列分析. 热带作物学报, 2012, 33(11): 2007-2011.
30. 江安庆， 苏轶， 郑月霞，张积森，叶冰莹， 陈由强. 植物蔗糖转运蛋白的研究进展.安徽农业科学.2011.39(34). 20938-20940，20974
29. 魏芳，林燕环，叶冰莹，张积森，陈由强.甘蔗根际土壤产木聚糖酶菌株的筛选及鉴定. 亚热带农业研究.2011.7( 3).201-205.
28. 林燕环，魏芳，叶冰莹，张积森，陈由强.酿酒酵母ADH2基因沉默表达载体的构建. 亚热带农业研究.2011.7( 3).197-200.
27. 苏轶，江安庆，逯平杰，张积森，叶冰莹，陈由强.超声辅助萃取HPLC法测定烟草中蔗糖、果糖、葡萄糖含量.安徽农业科学.2011.39(24). 14988-14989,14992.
26. 吴自明，江安庆，张积森，叶冰莹，陈由强* .甘蔗ShSUT4基因及其5’侧翼序列的克隆与序列分析.亚热带农业研究.2012. (2)126-130.
25. 胡巍，张积森，叶冰莹，陈由强*，陈如凯. 甘蔗蔗糖磷酸合成酶磷酸化位点的突变及相应表达载体的构建.亚热带农业研究.2010. 6(4).77-80
24. 张积森，郭春芳，王冰梅，张木清*，陈由强*，陈如凯.甘蔗一个水分胁迫响应相关的醛脱氢酶基因克隆及其表达特征分析.中国农业科学.2009,42(8): 2676-2685.
23. 刘文荣*，张积森*，饶进，蔡秋华，翁笑艳，阮妙鸿，阙友雄，陈如凯，张木清.干旱胁迫下斑茅消减文库的构建及分析，作物学报（*共同第一作者）2007,33(6):961-967.
22. 张积森，李伟，阙友雄，阮妙鸿，张木清，陈如凯.斑茅两个看家基因片段的克隆及其在基因芯片中的应用.热带亚热带植物学报，2007，15（3）：277-283.
21.张积森，李伟，阮妙鸿，阙友雄，陈如凯，张木清. Cloning of aco from Erianthus arundinaceus and its expression under water-stress（英文稿）.热带作物学报. 2007,28(2):60-68.
20.张积森，阙友雄，李 伟，阮妙鸿，张木清，陈如凯.水分胁迫下斑茅3个逆境代谢相关基因表达的实时PCR 分析.中国农学通报.2007, 5(23):49-54.
19.张积森、廖辉煌、林晓坤、陈如凯、张木清 拟南芥rd29A 启动子的克隆及其在甘蔗抗逆转基因中的应用初探（2007）.中国科协第四届优秀博士生学术年会论文集：117-123,中国科学出版社.
18. 张积森，黄金存，叶冰莹，陈由强，陈如凯.应用SMART 技术构建甘蔗叶片全长cDNA 文库,热带作物学报，2008,29(6):684-689
17.张积森,黄金存, 叶冰莹，陈由强，陈如凯.甘蔗ADP/ATP 转运蛋白酶基因克隆及其序列的生物信息学分析．中国农学通报，2009, 25(20):49-53
16.张积森,陈由强,郭春芳,李伟,阙友雄,叶冰莹,陈如凯,张木清*.甘蔗水分胁迫响应的δ-鸟氨酸转氨酶基因克隆及分子特征分析[J].热带作物学报,2009,30(8):1062~1068.
15. 张积森,陈由强,李伟,阙友雄,叶冰莹,陈如凯,张木清*.甘蔗△1-吡咯啉-5-羧酸合成酶基因（P5CS）的克隆及其表达分析[J].热带作物学报,2009,30(9): 1337~1344.
14. 何炜,叶冰莹, 周平,郑钊,张积森,何文锦,林荣华, 陈由强,陈如凯.甘蔗果糖-6-磷酸，2-激酶／果糖-2，6-二磷酸酶基因的cDNA 克隆及序列分析. 福建师范大学学报. 2009,25(3): 109-113.
13. 王冰梅; 张积森;黄庆煌; 叶冰莹; 陈如凯; 陈由强.马尾松银松素合酶基因转化双子叶植物表达载体的构建及鉴定. 福建师范大学学报. 2008 .24 (6)
12. Youxiong Que，Jianwei Lin, Jisen Zhang, etc..Cloning and analysis of NBS class disease resistance gene analogous in sugarcane. PROC.Internl.Symp. on Technologies to Improve Sugar Productivity in Developing Countries, Guilin, P.R.China,pp 623-628(2006).
11. 阙友雄，许莉萍，张木清，徐景升，张积森，陈如凯.甘蔗中一个NBS-LRR 类基因的全长克隆与表达分析，作物学报.2009, 35(6): 1161−1166
10. 阙友雄，许莉萍，徐景升，张积森，张木清，陈如凯.甘蔗基因表达定量PCR 分析中内参基因的选择.热带作物学报.2009.30（3）:274-278.
9. 阙友雄，许莉萍，林剑伟，徐景升，张积森，张木清，陈如凯.利用斑茅cDNA 芯片研究甘蔗受黑穗病菌侵染后基因差异表达.作物学报 2009, 35(5) 940-945
8. 曹罗元,叶冰莹,张积森,陈由强,陈如凯. Cre/loxP系统介导删除酿酒酵母ALD_4基因研究.中国酿造，2009（03）.20-23.
7. 阮妙鸿, 许燕,郑瑶,杨川毓, 张积森,阙友雄,陈如凯,张木清.转ScMV-CP 基因甘蔗对土壤微生物的影响.热带作物学报 2008 年 02 期
6. 郭春芳，张积森，张木清，陈如凯.外源ABA和乙烯利胁迫下斑茅ACO基因表达的实时PCR分析. 中国农学通报, 2008(2): 48-52.
5. 蔡秋华，张积森，刘文荣，饶进，翁笑艳，陈如凯，张木清.斑茅SAMDC 基因的克隆及其原核表达分析.福建稻麥科技. Vol.27 No.1 (2009/03). 17-20.
4. 连玲，叶冰莹，何炜，张积森，何文锦，陈由强，陈如凯. 甘蔗UGPasecDNA 的克隆及序列分析. 福建师范大学学报(自然科学版).2009(3):105-109.
3. 翁笑艳，阮妙鸿，张积森，郭春芳，郭莺，张木清.水分胁迫下Ca2+与甘蔗内源ABA的关系.武夷科学. 2007(23):1-5.
2. 蔡秋华，张积森，郭春芳等.高等植物体内多胺的生理功能及其分子生物学研究进展. 福建教育学院学报.2006 年,第10 期
1. 林荔辉,陈志伟,张积森,吴为人,周元昌,唐定中,利用回交和MAS 技术改良珍汕97B 的白叶枯病抗性. 福建农林大学学报（自然科学版）. 2004 Vol.33 No.3 P.280-283.
著作：
1. Jisen Zhang, Marvellous Zhou, James Walsh, Lin Zhu, Youqiang Chen, Ray Ming. Chapter 23: Sugarcane Genetics and Genomics. Physiology, Biochemistry, and Functional Biology of Sugarcane, First Edition. Edited by Paul H. Moore and Frederik C. Botha . 623-644. Published 2013 by John Wiley & Sons, Inc.（Book Chapter）
2. 张积森。第三章：甘蔗遗传与基因组学。P37-P57。2021.09出版。《现代甘蔗栽培育种学》。张木清、姚伟 等编著科学出版社。ISBN 978-7-03-066918-6。
教材：
3. 张积森，王正朝。遗传连锁构图.第二十章： 291-302. 王正朝，潘晓燕 著 《高级生理学进展》（英文），河南科学技术出版社，郑州，2015年，ISBN: 978-7-5349-7238-6.
4. Jisen Zhang and Zhengchao Wang. Genetic Linkage Mapping Chapter 20, 291-302 Wang ZC and Pan XY (Editors), 《Progress in Senior Physiology》, Henan Science and Technology Press, Zhengzhou, 2015, ISBN: 978-7-5349-7238-6.
5. 江波，张积森，王正朝（主编），《生物统计学》，成都：电子科技大学出版社，2020年12月，普通高等教育“十三五”规划教材，ISBN: 978-7-5647-8521-5.
6. 郭丽红(主编)、张积森(副主编)。植物生物生化，成都：电子科技大学出版社。普通高等教育“十三五”规划教材，2020年12月。书号： ISBN 978-7-5647-8509-3.
7. 郭丽红(主编)、张积森(副主编)。植物生物生化实验指导，普通高等教育“十三五”规划教材，成都：电子科技大学出版社。2021年2月。书号：ISBN 978-7-5647-8725-7（300千字）
