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于靑一


基因组与生物技术研究中心   发布时间: 2017-06-27   信息员:  

于青一,2003年8月获得美囯夏威夷大学分子生物学及生物工程学专业博士学位。在木瓜基因组、植物性染色体进化、甘蔗基因组、咖啡基因组等热带作物的研究领域取得优秀的成绩。先后在Nature,PNAS, The Plant Journal等权威刊物以第一作者或通讯作者发表文章;参与或主持了美国自然科学基金、美国农业部基金、德州政府基金等项目。现为德克萨斯农工大学助理教授,博士生导师。

主要研究方向:

1. 园艺作物性状遗传学及分子机制

2. 植物基因组结构与进化

3. 植物性染色体演化机制

4. 甘蔗基因学及其应用研究

代表论文:

1.Yu, Q. 2012. Physical Map of Papaya Genome. (In: Genetics and Genomics of papaya, P.H. Moore and R. Ming, eds.), Springer. (In press)

2. Aryal, R., X. Yang, Q. Yu, R. Sunkar, L. Li, R. Ming. 2012. Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya. BMC Genomics 13: 682

 3. Wai, C.M., P.H. Moore, R.E. Paull, R. Ming, Q. Yu. 2012. An integrated cytogenetic and physical map reveals unevenly distributed recombination spots along the papaya sex chromosomes. Chromosome Research 20: 753-767

  4.  Ming, R., Q. Yu, P.H. Moore, R.E. Paull, M.-L. Wang, Y. J. Zhu, M.A. Schuler, J. Jiang, A. H. Paterson. 2012.Genome of papaya, a fast growing tropical fruit tree. TGG 8:445-462.

  5.  Ming, R., Q. Yu, P.H. Moore.  2012. Papaya Genome and Genomics. (In: Genomics of Tree Crops, R.J. Schnell and P.M. Priyadarshan, eds.), Springer. Pp241-259

  6.  Rahman A.Y.A., A.O. Usharraj, B.B. Misra, G.P. Thottathil, K. Jayasekaran, Y. Feng, S. Hou, S.Y. Ong, F.L. Ng, L.S. Lee, H.S. Tan, M.K.L.M. Sakaff, B.S. Teh, B.F. Khoo, S.S. Badai, N.A. Aziz, A. Yuryev, B. Knudsen, A. Dionne-Laporte, N.P. Mchunu, Q. Yu, B.J. Langston, T.A.K. Freitas, A.G. Young, R. Chen, L. Wang, N. Najimudin, J.A. Saito, M. Alam. 2012. Draft genome sequence of the rubber tree Hevea brasiliensis. BMC Genomics (Accepted)

  7.  Wang, J.*, J.-K. Na*, Q.Yu*, A.R. Gschwend*, J. Han, F. Zeng, R. Aryal, R. VanBuren, J.E. Murray, W. Zhang, R. Navajas-Pérez, F.A. Feltus, C. Lemke, E.J. Tong, C. Chen, C.M. Wai, R. Singh, M.-L. Wang, X.J. Min, M. Alam, D. Charlesworth, P.H. Moore, J. Jiang, A.H. Paterson, R. Ming. 2012. Sequencing X and Yh chromosomes in papaya revealed the molecular basis of incipient sex chromosome evolution. PNAS 109: 13710-13715 (*equal contribution) (cover story)

  8.  Gschwend, A.R., Q.Yu*, E.J. Tong, F. Zeng, J. Han, R. VanBuren, R. Aryal, D. Charlesworth, P.H. Moore, A.H. Paterson, R. Ming*. 2012. Rapid divergence and expansion of the X chromosome in papaya. PNAS 109: 13716-13721 (* corresponding authors) (cover story)

  9.Na, J.-K., J. Wang, J.E. Murray,  A.R. Gschwend, W. Zhang, Q.Yu, R. Navajas-Pérez, A.F. Feltus, C. Chen, Z. Kubat, P.H. Moore, J. Jiang, A.H. Paterson, R. Ming. 2012. Construction of physical maps for the sex-specific regions of papaya sex chromosomes. BMC Genomics 13: 176

  10. Zhang, J., C. Nagai, Q. Yu, Y.-B. Pan, T. Ayala-Silva, R.J. Schnell, J.C. Comstock, A.K. Arumuganathan, R. Ming. 2012. Genome size variation in three Saccharum species. Euphytica 185:511-519

  11. Blas, A.L., Q. Yu, O.J. Veatch, R.E. Paull, P.H. Moore, R. Ming. 2012. Genetic mapping of quantitative trait loci controlling fruit size and shape in papaya. Molecular Breeding 29: 457-466

  12.  Yu, Q.*, R. Guyot, A. de Kochko, A. Byers, R. Navajas-Pérez, B.J. Langston, C. Dubreuil-Tranchant, A.H. Paterson, V. Poncet, C. Nagai, R. Ming. 2011. Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea). Plant Journal 67: 305-317. (* corresponding author)

  13.  Gschwend, A.R., Q. Yu, P.H. Moore, C. Saski, C. Chen, J. Wamg, J.-K. Na, R. Ming. 2011. Construction of papaya male and female BAC libraries and application in physical mapping of sex chromosomes. J. Biomed. Biotechnol. 2011: 929472

  14.  Blas A.L., R. Ming, Z. Liu, O.J. Veatch, R.E. Paull, P.H. Moore, Q. Yu. 2010. Cloning of the papaya chromoplast-specific lycopene β-cyclase, CpCYC-b, controlling fruit flesh color reveals conserved microsynteny and a recombination hotspot. Plant Physiology 152:2013-2022.

  15.  Wu, X., J. Wang, J.K. Na, Q. Yu, R.C. Moore, F. Zee, S.C. Huber, R. Ming. 2010. The origin of the non-recombining region of sex chromosomes in Carica and Vasconcellea. Plant Journal 63: 801-810.

  16.  Wai, C.M., R. Ming, P.H. Moore, R.E. Paull, Q. Yu. 2010. Development of chromosome-specific cytogenetic markers and merging of linkage fragments in papaya. Tropical plant biology 3: 171-181.

  17.  Wang, J., B. Roe, S. Macmil, Q. Yu, J.E. Murray, H. Tang, C. Chen, F. Najar, G. Wiley, J. Bowers, M.-A. Van Sluys, D.S. Rokhsar, M.E. Hudson, S.P. Moose, A.H. Paterson, R. Ming. 2010. Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. BMC genomics 11: 261.

  18.  Zhang,W., Wai, C.M., Ming, R., Yu, Q., Jiang, J. 2010. Integration of genetic and cytological maps and development of a pachytene chromosome-based karyotype in papaya. Tropical plant biology 3: 166-170.

  19.  Damaj, M.D., P.D. Beremand, M.T. Buenrostro-Nava, J. Ivy, S.P. Kumpatla, J. Jifon, G. Beyene, Q. Yu, T.L. Thomas, T.E. Mirkov. 2010. Isolating promoters of multigene family members from polyploidy sugarcane genome by PCR-based walking in BAC DNA. Genome 53: 840-847.

  20.  Yu, Q., E. Tong, R.L. Skelton, J.E. Bowers, M.R. Jones, J.E. Murray, S. Hou, P. Guan, R.A. Acob, M.C. Luo, P.H. Moore, M. Alam, A.H. Paterson, R. Ming. 2009. A physical map of the papaya genome with integrated genetic map and genome sequence. BMC Genomics 10: 371.

  21.  Blas A.L., Q. Yu, C. Chen, O. Veatch, P.H. Moore, R.E. Paull, R. Ming. 2009. Enrichment of a papaya high-density genetic map with AFLP markers. Genome 52: 716-725.

  22.  Ming R.*, S. Hou*, Y. Feng*, Q. Yu*, A. Dionne-Laporte, J.H. Saw, P. Senin, W. Wang, B.V. Ly, K.L.T. Lewis, S.L. Salzberg, L. Feng, M.R. Jones, R.L. Skelton, J.E. Murray, C. Chen, W. Qian, J. Shen, P. Du, M. Eustice, E. Tong, H. Tang, E. Lyons, R.E. Paull, T.P. Michael, K. Wall, D. Rice, H. Albert, M.-L. Wang, Y.J. Zhu, M. Schatz, N. Nagarajan, R. Agbayani, P. Guan, A. Blas, C. M. Wai, C.M. Ackerman, Y. Ren, C. Liu, J. Wang, J. Wang, J.-K. Na, E.V. Shakirov, B. Haas, J. Thimmapuram, D. Nelson, X. Wang, J.E. Bowers, A.R. Gschwend, A.L. Delcher, R. Singh, J.Y. Suzuki, S. Tripathi, K. Neupane, H. Wei, B. Irikura, M. Paidi, N. Jiang, W. Zhang, G. Presting, A. Windsor, R. Navajas-Pérez, M.J. Torres, F. Alex Feltus, B. Porter, Y. Li, A.M. Burroughs, M.-C. Luo, L. Liu, D.A. Christopher, S.M. Mount, P.H. Moore, T. Sugimura, J. Jiang, M.A. Schuler, V. Friedman, T. Mitchell-Olds, D.E. Shippen, C.W. dePamphilis, J.D. Palmer, M. Freeling, A.H. Paterson, D. Gonsalves, L. Wang, M. Alam. 2008. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 452:991-996 (*equal contribution) (cover story).

  23.  Yu, Q., R. Navajas-Pérez, E. Tong, J. Robertson, P.H. Moore, A.H. Paterson, R. Ming. 2008. Recent origin of dioecious and gynodioecious Y chromosomes in papaya. Tropical Plant Biology 1:49-57.

  24.  Zhang W., X. Wang, Q. Yu, R. Ming, and J. Jiang. 2008. DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya. Genome Research 18: 1938-1943 (Cover story).

  25.  Paull R.E., B. Irikura, P. Wu, H. Turano, N. J. Chen, A. Blas, J.K. Fellman, A.R. Gschwend, C.M. Wai, Q. Yu, G. Presting, M. Alam, R. Ming. 2008. Fruit Development, Ripening and Quality Related Genes in the Papaya Genome.  Tropical Plant Biology 1: 246-277.

  26.  Ming, R., Q. Yu, A. Blas, C. Chen, J.-K. Na, P.H. Moore. 2008. Genomics of papaya, a common source of vitamins in the tropics. (In: Genomics of Tropical Crop Plants, P.H. Moore and R. Ming, eds.), Springer. pp 405-420.

  27.  Yu, Q., S. Hou, F.A. Feltus, M.R. Jones, J.E. Murray, O. Veatch, C. Lemke, J. H. Saw, R.C. Moore, J. Thimmapuram, L. Liu, P.H. Moore, M. Alam, J. Jiang, A.H. Paterson, R. Ming. 2008. Low X/Y divergence in four pairs of papaya sex linked genes. Plant J. 53:124-132. (cover story)

  28.  Wang J., C. Chen, J.-K. Na, Q. Yu, S. Hou, R.E. Paull, P.H. Moore, M. Alam, R. Ming. 2008. Genome-Wide Comparative Analyses of Microsatellites in Papaya. Tropical Plant Biology 1: 278-292.

  29.  Ackerman, C.M. *, Q. Yu*, S. Kim, R.E. Paull, P.H. Moore, R. Ming. 2008. B-class MADS-box genes in trioecious papaya: two paleoAP3 paralogs, CpTM6-1 and CpTM6-2, and a PI ortholog CpPI. Planta 227:741-753. (*equal contribution).

  30.  Suzuki J.Y., S. Tripathi, G.A. Fermín, F.-J. Jan, S. Hou, J.H. Saw, C.M. Ackerman, Q. Yu, M.C. Schatz, K.Y. Pitz, M. Yépes, M.M.M. Fitch, R.M. Manshardt, J.L. Slightom, S.A. Ferreira, S.L. Salzberg, M. Alam, R. Ming, P.H. Moore, D. Gonsalves. 2008. Characterization of Insertion Sites in Rainbow Papaya, the First Commercialized Transgenic Fruit Crop. Tropical Plant Biology 1: 293-309.

  31.  Eustice, M., Q. Yu, W. C. Lai, S. Hou, J. Thimmapuram, L. Liu, M. Alam, P.H. Moore, G.G. Presting, R. Ming. 2008. Development and application of microsatellite markers for genomic analysis of papaya. Tree Genetics and Genomes 4:333-341.

  32.  Yu, Q., D. Steiger, E.M. Kramer, P.H. Moore, R. Ming. 2008. Floral MADS-box genes in trioecious papaya: Characterization of AG and AP1 subfamily genes revealed a sex-type-specific gene. Tropical Plant Biology 1: 97-107.

  33.  Chen, C., Q. Yu, S. Hou, Y. Li, M. Eustice, R.L. Skelton, O. Veatch, R. Herds, L. Diebold, J. Saw, Y. Feng, L. Bynum, L. Wang, P.H. Moore, R.E. Paull, M. Alam, R. Ming. 2007. Construction of a sequence-tagged high-density genetic map of papaya for comparative structural and evolutionary genomics in Brassicales. Genetics 177:2481-2491.

  34.  Yu, Q., S. Hou, R. Hobza, F.A. Feltus, X. Wang, W. Jin, R.L. Skelton, A. Blas, C. Lemke, J. H. Saw, P.H. Moore,M. Alam, J. Jiang, A.H. Paterson, B. Vyskot, R. Ming. 2007. Chromosomal location and gene paucity of the male specific region on papaya Y chromosome. Molecular Genetics and Genomics 278:177-185.

  35.  Ming, R., Q. Yu, P.H. Moore. 2007. Sex determination in papaya. Seminars in cell and developmental biology 18:401-408.

  36.  Lai, C.W.J.*, Q. Yu*, S. Hou, R.L. Skelton, M.R. Jones, K.L.T. Lewis, J. Murray, M. Eustice, P. Guan, R. Agbayani, P.H. Moore, R. Ming, G.G. Presting. 2006. Analysis of papaya BAC end sequences reveals first insights into the organization of a fruit tree genome. Molecular Genetics and Genomics 276:1-12 (*equal contribution).

  37.  Skelton, R. L., Q. Yu, R. Srinivasan, R. Manshardt, P. H. Moore, R. Ming. 2006. Tissue differential expression of Lycopene β-cyclase gene in papaya. Cell Research 16:731-739.

  38.  Yu, Q., P. H. Moore, H. H. Albert, A. H. K. Roader, R. Ming. 2005 Cloning and characterization of a FLORICAULA/LEAFY ortholog, PFL, in polygamous papaya. Cell Research 15:576-584.

  39.  Alvarez, A.M., K.J. Trotter, M.B. Swafford, J.M. Berestecky, Q. Yu, R. Ming, P.R. Hepperly, and F. Zee. 2005. Characterization and detection of Ralstonia solanacearum strains causing bacterial wilt of ginger in Hawaii. (in: Bacterial Wilt Disease and the Ralstonia solanacearum species complex. C. Allen, P. Prior, and A.C. Hayward, eds.) APS Press (American Phytopathological Society) St.Paul, Mn. pp 471-477.

  40.  Ma, H., P. H. Moore, Z. Liu, M. S. Kim, Q. Yu, M. M. M. Fitch, T. Sekioka, A. H. Paterson, R. Ming. 2004. High-density genetic mapping revealed suppression of recombination at the sex determination locus in papaya. Genetics 166:419-436.

  41.  Liu, Z., P. H. Moore, H. Ma, C. M. Ackerman, R. Makandar, Q. Yu, H. M. Pearl, M. S. Kim, J. W. Charlton, J. I. Stiles, F. T. Zee, A. H. Paterson, R. Ming. 2004. A primitive Y chromosome in papaya marks incipient sex chromosome evolution. Nature 427:348-352.

  42.  Schenck, S., M.W. Crepeau, K.K. Wu, P.H. Moore, Q. Yu, R. Ming. 2004. Genetic Diversity and Relationships in Native Hawaiian Saccharum officinarum Sugarcane. Journal of Heredity 95:327-331.

  43.  Yu, Q., A.M. Alvarez, P.H. Moore, F. Zee, M.S. Kim, A. de Silva, P.R. Hepperly, R.Ming. 2003. Molecular Diversity of Ralstonia solanacearum Isolated from Ginger in Hawaii. Phytopathology 93:1124-1130.

  相关简介:http://plantpathology.tamu.edu/people/faculty/dr-qingyi-yu/


 
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