加入收藏 | English
     
当前位置: 首页  研究队伍  中心PI

唐海宝


基因组与生物技术研究中心   发布时间: 2017-06-28   信息员:  

唐海宝,教授,博士生导师,福建省“百人计划”专家。200912月获得美国佐治亚大学(University of Georgia)植物学博士学位。在古生物基因组学、比较基因组、数据库开发等研究领域取得优异的成绩,是基因组序列装配、基因注释、数据库建设、基因组比较分析方面的专家。先后在《Science》、《Nature》、《PNAS》、《Nature Genetics》、《The Plant Cell 》、《Genome Research》等国际学术期刊发表文章39篇。现为The University of Arizona资深科学家,福建农林大学海外引进人才,福建农林大学博士生导师。

主要研究方向:

1.多倍体基因组组成、基因互作和调控网络的进化模式;

2.作物基因组内受人工选择的遗传位点;

3.计算生物学方法、分析平台和数据库的开发和应用。

  

电子邮箱:tanghaibao@gmail.com

39)  Paterson, AH, …, Tang, H, …, Schmutz, J (2012) Repeated polyploidization of  Gossypium genomes and the evolution of spinnable cotton fibres. Nature,  doi:10.1038/nature11798.

38) Lee, TH, Tang, H, Wang, X, Paterson, AH (2012)  PGDD: a database of gene and genome duplication in plants. Nucleic Acids  Research, 1–7, doi:10.1093/nar/gks1104
  36) Tang, H, Lyons, E (2012) The  Evolution of Genome Structure. Int J Evol, 1:1 (Editorial)

35) Lu, J,  Peatman, E, Tang, H, Lewis, J, Liu, Z (2012) Profiling of gene duplication  patterns of sequenced teleost genomes: evidence for rapid lineage-specific  genome expansionmediated by recent tandem duplications. BMC Genomics, 13:  246.

34) Sato, S, …, Tang, H, …, Klein Lankhorst, RM (2012) The tomato  genome sequence provides insights into fleshy fruit evolution.Nature, 485:  635-641.

33) Tang, H, Woodhouse, MR, Cheng, F, Schnable, JC, Pedersen, BS,  et al. (2012) Altered patterns of fractionation and exon deletions in Brassica  rapa support a two-step model of paleohexaploidy. Genetics, 190:1563-1574 (First  Author).

32) Wang, Y*, Tang, H*, Debarry, JD, Tan, X, Li, J, et al. (2012)  MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and  collinearity. Nucleic Acids Research, 40: e49 (co-First Author).

31)  Woodhouse, MR, Tang, H, Freeling, M. (2011) Different gene families in  Arabidopsis thaliana transposed in different epochs and at different  frequencies throughout the rosids. Plant cell, 23: 4241-4253.

30) Wang, Y,  Wang, X, Tang, H, Tan, X, Ficklin, SP, et al. (2011) Modes of Gene Duplication  Contribute Differently to genetic novelty and redundancy, but show parallels  across divergent angiosperms. PLoS One, 6: e28150.

29) Young, ND, …, Tang,  H, …, Roe, B (2011) The medicago genome provides insight into the evolution of  rhizobial symbioses. Nature, 480: 520-524.

28) Wang, X, …, Tang, H, …,  Zhang, Z (2011) The genome of the mesopolyploid crop species Brassica rapa.  Nature Genetics, 43: 1035-1039.

27) Zuccolo, A, …, Tang, H, …,  Leebens-Mack, J (2011) A physical map for the Amborella trichopoda genome sheds  light on the evolution of angiosperm genome structure. Genome Biology, 12:  R48.

26) Ratnaparkhe, MB, …, Tang, H, …, Paterson, AH (2011) Comparative  analysis of peanut NBSLRR gene clusters suggests evolutionary innovation among  duplicated domains and erosion of gene microsynteny. New Phytologist, 192:  164-178.

25) Lin, L, Tang, H, Compton, RO, Lemke, C, Rainville, LK, et al.  (2011) Comparative analysis of Gossypium and Vitis genomes indicates genome  duplication specific to the Gossypium lineage. Genomics, 97: 313-320.

24)  Pedersen, BS, Tang, H, Freeling, M (2011) Gobe: an interactive, web-based tool  for comparative genomic visualization.Bioinformatics, 27(7):1015-6.

23)  Wang, X, Tang, H, Paterson, AH (2011) Seventy million years of concerted  evolution of a homoeologous chromosome pair, in parallel, in major Poaceae  lineages. Plant Cell, 23(1):27-37.

22) Tang, H, Lyons E, Pedersen B,  Schnable JC, Paterson AH, Freeling M (2011) Screening synteny blocks in pairwise  genome comparisons through integer programming. BMC Bioinformatics, 12: 102  (First Author).

21) Tang, H, Sezen, U, and Paterson, AH (2010)  Domestication and plant genomes. Current Opinion in Plant Biology,  13(2):160-6(First Author).

20) Tang, H, Bowers, JE, Wang, X, and Paterson,  AH (2010) Angiosperm genome comparisons reveal early polyploidy in the monocot  lineage. PNAS, 107(1): 472-7 (First Author).

19) Lin, L, …, Tang, H, …,  Paterson, AH (2010) A draft physical map of a D-genome cotton species (Gossypium  raimondii). BMC Genomics, 11(1):395. 

18) Paterson, AH, Freeling, M, Tang,  H, Wang, X (2010) Insights from the comparison of plant genome sequences. Annual  Review of Plant Biology, 61: 349-72.

17) Wang, J, …, Tang, H, …, Ming R  (2010) Microcollinearity between autopolyploid sugarcane and diploid sorghum  genomes. BMC Genomics, 11(1): 261.

16) Li, G, Ma, Q, Tang, H, Paterson, AH  and Xu, Y (2009) QUBIC: a qualitative biclustering algorithm for analyses of  gene expression data. Nucleic Acid Research, 37: e101.

15) Charles, M,  Tang, H, Belcram H, Paterson A, Gornicki P, et al. (2009) Sixty million years in  evolution of soft grain trait in grasses: emergence of the softness locus in the  common ancestor of Pooideae and Ehrhartoideae, after their divergence from  Panicoideae. Molecular Biology and Evolution, 26: 1651-1661.

14) Wang, X,  Tang, H, Bowers, JE, Paterson, AH (2009) Comparative inference of illegitimate  recombination between rice and sorghum duplicated genes produced by  polyploidization. Genome Research, 19: 1026-1032.

13) Paterson, AH, Bowers,  JE, Feltus, FA, Tang, H, Lin, L, Wang, X (2009) Comparative genomics of the  grasses: Promising a bountiful harvest. Plant Physiology, 149, 125-131.

12)  Paterson, AH, …, Tang, H, …, Rokhsar, DS (2009) The Sorghum bicolor genome and  the diversification of grasses. Nature, 457, 551-556.

11) Wang, X, Gowik,  U, Tang, H, Bowers, JE, Westhoff, P, Paterson, AH (2009) Comparative genomic  analysis of C4 photosynthetic pathway evolution in grasses. Genome Biology, 10:  R68.

10) Kim, C, Tang, H and Paterson, AH (2009) Duplication and Divergence  of Grass Genomes: Integrating the Chloridoids. Tropical Plant Biology, 2,  51-62.

9) Che, D, Tang, H and Song, Y (2009) Haplotype inference using a  genetic algorithm. Proceedings of IEEE Bioinformatics and Computational Biology,  31-37.

8) Lyons, E, …, Tang, H, …, Freeling, M (2008) Finding and Comparing  Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape:  CoGe with Rosids. Plant Physiology, 148, 1772-81.

7) Jang, CS, Kamps, TL,  Tang, H, Bowers, JE, Lemke, C, Paterson, AH (2008) Evolutionary fate of  rhizome-specific genes in a non-rhizomatous Sorghum genotype. Heredity 102:  266-273.

6) Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH (2008)  Synteny and Collinearity in Plant Genomes, Science, 320, 486-488 (First  Author).

5) Tang H, Wang X, Bowers JE, Ming R, Alam M, Paterson AH (2008)  Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps,  Genome Research, 18, 1944-1954 (First Author).

4) Ming, R, ..., Tang, H, …,  Alam M (2008) The draft genome of the transgenic tropical fruit tree papaya  (Carica papaya Linnaeus),Nature, 452, 991-996.

3) Wang, X, Tang, H, Bowers,  JE, Feltus, FA, Paterson, AH (2007) Extensive concerted evolution of rice  paralogs and the road to regaining independence, Genetics, 177,  1753-1763.

2) Liu, Q, Ge, S, Tang, H, Zhang, X, Zhu, G, Lu, BR (2006)  Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear  ribosomal internal transcribed spacer and chloroplast trnL-F sequences, New  Phytologist, 170, 411-420.

1) Bowers, JE, …, Tang, H, Wing, RA, Paterson,  AH. (2005) Comparative physical mapping links conservation of microsynteny to  chromosome structure and recombination in grasses, PNAS, 102,  13206-13211


 
版权所有◎福建农林大学基因组与生物技术研究中心 地址:福建省福州市仓山区上下店路15号

后台管理